Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03675 and PS417_03680 are separated by 111 nucleotides PS417_03680 and PS417_03685 overlap by 4 nucleotides PS417_03685 and PS417_03690 are separated by 209 nucleotides
PS417_03675: PS417_03675 - hypothetical protein, at 831,954 to 832,913
_03675
PS417_03680: PS417_03680 - hypothetical protein, at 833,025 to 833,240
_03680
PS417_03685: PS417_03685 - FAD-dependent oxidoreductase, at 833,237 to 834,223
_03685
PS417_03690: PS417_03690 - NAD-dependent dehydratase, at 834,433 to 835,332
_03690
Position (kb) 833
834
835 Strain fitness (log2 ratio) -1
0
1
2 at 832.333 kb on + strand, within PS417_03675 at 832.333 kb on + strand, within PS417_03675 at 832.333 kb on + strand, within PS417_03675 at 832.334 kb on - strand, within PS417_03675 at 832.340 kb on - strand, within PS417_03675 at 832.513 kb on + strand, within PS417_03675 at 832.514 kb on - strand, within PS417_03675 at 832.514 kb on - strand, within PS417_03675 at 832.559 kb on - strand, within PS417_03675 at 832.652 kb on - strand, within PS417_03675 at 832.913 kb on + strand at 832.974 kb on + strand at 832.974 kb on + strand at 833.332 kb on - strand at 833.968 kb on - strand, within PS417_03685 at 834.055 kb on - strand, within PS417_03685 at 834.238 kb on + strand at 834.248 kb on - strand at 834.268 kb on + strand at 834.269 kb on - strand at 834.269 kb on - strand at 834.295 kb on - strand at 834.335 kb on - strand at 834.385 kb on - strand at 834.386 kb on + strand at 834.392 kb on - strand at 834.416 kb on + strand at 834.567 kb on - strand, within PS417_03690 at 835.025 kb on + strand, within PS417_03690 at 835.026 kb on - strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.029 kb on + strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.030 kb on - strand, within PS417_03690 at 835.090 kb on + strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.091 kb on - strand, within PS417_03690 at 835.092 kb on + strand, within PS417_03690 at 835.092 kb on + strand, within PS417_03690 at 835.093 kb on - strand, within PS417_03690 at 835.093 kb on - strand, within PS417_03690
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 832,333 + PS417_03675 0.39 -0.4 832,333 + PS417_03675 0.39 -0.4 832,333 + PS417_03675 0.39 -1.7 832,334 - PS417_03675 0.40 +0.8 832,340 - PS417_03675 0.40 +1.2 832,513 + PS417_03675 0.58 +0.1 832,514 - PS417_03675 0.58 +0.2 832,514 - PS417_03675 0.58 +0.9 832,559 - PS417_03675 0.63 -0.2 832,652 - PS417_03675 0.73 -1.1 832,913 + +0.2 832,974 + -0.1 832,974 + +0.9 833,332 - -0.1 833,968 - PS417_03685 0.74 +0.3 834,055 - PS417_03685 0.83 +0.3 834,238 + +0.3 834,248 - +0.8 834,268 + +0.4 834,269 - +2.7 834,269 - -0.1 834,295 - -0.3 834,335 - -0.4 834,385 - +0.8 834,386 + +0.0 834,392 - -0.4 834,416 + -0.1 834,567 - PS417_03690 0.15 -0.8 835,025 + PS417_03690 0.66 -0.3 835,026 - PS417_03690 0.66 -0.8 835,029 + PS417_03690 0.66 -0.9 835,029 + PS417_03690 0.66 -0.0 835,029 + PS417_03690 0.66 +0.4 835,029 + PS417_03690 0.66 +0.4 835,029 + PS417_03690 0.66 -0.5 835,029 + PS417_03690 0.66 -0.4 835,029 + PS417_03690 0.66 -1.1 835,030 - PS417_03690 0.66 -0.4 835,030 - PS417_03690 0.66 +2.4 835,030 - PS417_03690 0.66 +0.1 835,030 - PS417_03690 0.66 +1.0 835,030 - PS417_03690 0.66 -0.3 835,030 - PS417_03690 0.66 +0.2 835,030 - PS417_03690 0.66 +0.1 835,030 - PS417_03690 0.66 -0.4 835,030 - PS417_03690 0.66 +0.2 835,030 - PS417_03690 0.66 -0.4 835,090 + PS417_03690 0.73 +0.7 835,091 - PS417_03690 0.73 -0.5 835,091 - PS417_03690 0.73 -0.5 835,091 - PS417_03690 0.73 +0.6 835,091 - PS417_03690 0.73 -0.1 835,092 + PS417_03690 0.73 -0.3 835,092 + PS417_03690 0.73 +0.4 835,093 - PS417_03690 0.73 -0.4 835,093 - PS417_03690 0.73 -1.1
Or see this region's nucleotide sequence