Strain Fitness in Pseudomonas simiae WCS417 around PS417_00340

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00335 and PS417_00340 overlap by 13 nucleotidesPS417_00340 and PS417_00345 overlap by 4 nucleotidesPS417_00345 and PS417_00350 are separated by 161 nucleotides PS417_00335: PS417_00335 - cytochrome B561, at 64,938 to 66,017 _00335 PS417_00340: PS417_00340 - protoheme IX farnesyltransferase, at 66,005 to 66,904 _00340 PS417_00345: PS417_00345 - copper-binding protein, at 66,901 to 67,536 _00345 PS417_00350: PS417_00350 - methionine ABC transporter substrate-binding protein, at 67,698 to 68,468 _00350 Position (kb) 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 65.010 kb on + strandat 65.012 kb on + strandat 65.013 kb on - strandat 65.013 kb on - strandat 65.013 kb on - strandat 65.061 kb on + strand, within PS417_00335at 65.062 kb on - strand, within PS417_00335at 65.172 kb on + strand, within PS417_00335at 65.417 kb on - strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.604 kb on - strand, within PS417_00335at 65.604 kb on - strand, within PS417_00335at 65.625 kb on + strand, within PS417_00335at 65.625 kb on + strand, within PS417_00335at 65.626 kb on - strand, within PS417_00335at 65.626 kb on - strand, within PS417_00335at 65.626 kb on - strand, within PS417_00335at 65.740 kb on + strand, within PS417_00335at 65.741 kb on - strand, within PS417_00335at 65.741 kb on - strand, within PS417_00335at 65.745 kb on - strand, within PS417_00335at 65.814 kb on + strand, within PS417_00335at 65.815 kb on - strand, within PS417_00335at 65.895 kb on + strand, within PS417_00335at 65.896 kb on - strand, within PS417_00335at 65.896 kb on - strand, within PS417_00335at 65.963 kb on + strandat 65.972 kb on - strandat 65.991 kb on - strandat 66.053 kb on + strandat 66.097 kb on + strand, within PS417_00340at 66.098 kb on - strand, within PS417_00340at 66.157 kb on - strand, within PS417_00340at 66.407 kb on + strand, within PS417_00340at 66.408 kb on - strand, within PS417_00340at 66.443 kb on - strand, within PS417_00340at 66.443 kb on - strand, within PS417_00340at 66.647 kb on + strand, within PS417_00340at 66.648 kb on - strand, within PS417_00340at 66.707 kb on + strand, within PS417_00340at 66.708 kb on - strand, within PS417_00340at 66.708 kb on - strand, within PS417_00340at 66.792 kb on - strand, within PS417_00340at 66.833 kb on + strandat 66.833 kb on + strandat 66.838 kb on + strandat 66.839 kb on - strandat 66.839 kb on - strandat 66.845 kb on + strandat 66.888 kb on - strandat 66.900 kb on + strandat 66.900 kb on + strandat 66.900 kb on + strandat 66.900 kb on + strandat 67.225 kb on - strand, within PS417_00345at 67.408 kb on + strand, within PS417_00345at 67.409 kb on - strand, within PS417_00345at 67.409 kb on - strand, within PS417_00345at 67.409 kb on - strand, within PS417_00345at 67.530 kb on + strandat 67.530 kb on + strandat 67.530 kb on + strandat 67.531 kb on - strandat 67.531 kb on - strandat 67.535 kb on - strandat 67.727 kb on - strandat 67.834 kb on + strand, within PS417_00350at 67.835 kb on - strand, within PS417_00350

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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65,010 + -0.4
65,012 + +0.3
65,013 - +0.6
65,013 - -0.8
65,013 - -1.9
65,061 + PS417_00335 0.11 +0.9
65,062 - PS417_00335 0.11 -0.0
65,172 + PS417_00335 0.22 -0.1
65,417 - PS417_00335 0.44 +0.0
65,603 + PS417_00335 0.62 +0.4
65,603 + PS417_00335 0.62 +0.9
65,603 + PS417_00335 0.62 -0.4
65,603 + PS417_00335 0.62 -0.5
65,604 - PS417_00335 0.62 -0.9
65,604 - PS417_00335 0.62 -2.1
65,625 + PS417_00335 0.64 -0.1
65,625 + PS417_00335 0.64 -0.1
65,626 - PS417_00335 0.64 -0.5
65,626 - PS417_00335 0.64 -0.3
65,626 - PS417_00335 0.64 +0.2
65,740 + PS417_00335 0.74 -0.8
65,741 - PS417_00335 0.74 -0.1
65,741 - PS417_00335 0.74 +1.1
65,745 - PS417_00335 0.75 +0.1
65,814 + PS417_00335 0.81 -0.2
65,815 - PS417_00335 0.81 -0.3
65,895 + PS417_00335 0.89 -1.5
65,896 - PS417_00335 0.89 -0.0
65,896 - PS417_00335 0.89 -0.6
65,963 + -0.3
65,972 - +0.7
65,991 - -0.2
66,053 + -0.6
66,097 + PS417_00340 0.10 +0.3
66,098 - PS417_00340 0.10 -1.7
66,157 - PS417_00340 0.17 -0.0
66,407 + PS417_00340 0.45 -0.6
66,408 - PS417_00340 0.45 -1.7
66,443 - PS417_00340 0.49 +0.4
66,443 - PS417_00340 0.49 -0.3
66,647 + PS417_00340 0.71 -2.6
66,648 - PS417_00340 0.71 +0.9
66,707 + PS417_00340 0.78 +0.9
66,708 - PS417_00340 0.78 +0.6
66,708 - PS417_00340 0.78 -0.0
66,792 - PS417_00340 0.87 -0.5
66,833 + -1.6
66,833 + -0.7
66,838 + -1.2
66,839 - -0.0
66,839 - +0.0
66,845 + +0.5
66,888 - -0.5
66,900 + +0.3
66,900 + -0.4
66,900 + -0.5
66,900 + -1.3
67,225 - PS417_00345 0.51 +0.9
67,408 + PS417_00345 0.80 +0.3
67,409 - PS417_00345 0.80 +2.3
67,409 - PS417_00345 0.80 -1.0
67,409 - PS417_00345 0.80 -0.6
67,530 + +1.7
67,530 + -0.0
67,530 + -0.2
67,531 - -0.4
67,531 - +0.1
67,535 - -0.0
67,727 - -1.6
67,834 + PS417_00350 0.18 +0.9
67,835 - PS417_00350 0.18 +0.7

Or see this region's nucleotide sequence