Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03160 and PS417_03165 are separated by 66 nucleotides PS417_03165 and PS417_03170 are separated by 147 nucleotides PS417_03170 and PS417_03175 are separated by 85 nucleotides
PS417_03160: PS417_03160 - metal ABC transporter ATPase, at 724,709 to 726,910
_03160
PS417_03165: PS417_03165 - hypothetical protein, at 726,977 to 727,357
_03165
PS417_03170: PS417_03170 - copper resistance protein CopZ, at 727,505 to 727,702
_03170
PS417_03175: PS417_03175 - major facilitator transporter, at 727,788 to 728,981
_03175
Position (kb) 726
727
728 Strain fitness (log2 ratio) -1
0
1 at 726.402 kb on + strand, within PS417_03160 at 726.403 kb on - strand, within PS417_03160 at 726.403 kb on - strand, within PS417_03160 at 726.406 kb on + strand, within PS417_03160 at 726.407 kb on - strand, within PS417_03160 at 726.407 kb on - strand, within PS417_03160 at 726.407 kb on - strand, within PS417_03160 at 726.407 kb on - strand, within PS417_03160 at 726.493 kb on + strand, within PS417_03160 at 726.495 kb on + strand, within PS417_03160 at 726.495 kb on + strand, within PS417_03160 at 726.496 kb on - strand, within PS417_03160 at 726.978 kb on + strand at 726.979 kb on - strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.005 kb on + strand at 727.006 kb on - strand at 727.006 kb on - strand at 727.006 kb on - strand at 727.006 kb on - strand at 727.030 kb on + strand, within PS417_03165 at 727.044 kb on - strand, within PS417_03165 at 727.044 kb on - strand, within PS417_03165 at 727.063 kb on + strand, within PS417_03165 at 727.215 kb on + strand, within PS417_03165 at 727.279 kb on - strand, within PS417_03165 at 727.418 kb on + strand at 727.683 kb on - strand at 727.713 kb on + strand at 727.801 kb on + strand at 727.929 kb on + strand, within PS417_03175 at 727.962 kb on + strand, within PS417_03175 at 727.963 kb on - strand, within PS417_03175 at 727.963 kb on - strand, within PS417_03175
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 726,402 + PS417_03160 0.77 -0.0 726,403 - PS417_03160 0.77 -0.3 726,403 - PS417_03160 0.77 -0.8 726,406 + PS417_03160 0.77 +1.3 726,407 - PS417_03160 0.77 -0.5 726,407 - PS417_03160 0.77 -0.4 726,407 - PS417_03160 0.77 -0.3 726,407 - PS417_03160 0.77 -0.0 726,493 + PS417_03160 0.81 +0.8 726,495 + PS417_03160 0.81 +0.6 726,495 + PS417_03160 0.81 +0.8 726,496 - PS417_03160 0.81 +0.4 726,978 + -0.2 726,979 - +0.3 727,005 + -0.6 727,005 + -0.6 727,005 + -0.6 727,005 + +0.3 727,005 + +1.5 727,006 - -0.6 727,006 - +0.2 727,006 - +0.2 727,006 - +0.4 727,030 + PS417_03165 0.14 -0.6 727,044 - PS417_03165 0.18 +0.5 727,044 - PS417_03165 0.18 -1.3 727,063 + PS417_03165 0.23 -1.2 727,215 + PS417_03165 0.62 +0.1 727,279 - PS417_03165 0.79 -0.7 727,418 + +0.4 727,683 - -0.3 727,713 + +0.1 727,801 + +0.2 727,929 + PS417_03175 0.12 -0.3 727,962 + PS417_03175 0.15 +0.8 727,963 - PS417_03175 0.15 +0.7 727,963 - PS417_03175 0.15 +0.0
Or see this region's nucleotide sequence