Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26830 and PS417_26835 are separated by 29 nucleotides PS417_26835 and PS417_26840 are separated by 33 nucleotides PS417_26840 and PS417_26845 are separated by 146 nucleotides
PS417_26830: PS417_26830 - alpha/beta hydrolase, at 5,793,607 to 5,794,602
_26830
PS417_26835: PS417_26835 - 3-mercaptopyruvate sulfurtransferase, at 5,794,632 to 5,795,495
_26835
PS417_26840: PS417_26840 - TetR family transcriptional regulator, at 5,795,529 to 5,796,200
_26840
PS417_26845: PS417_26845 - coniferyl aldehyde dehydrogenase, at 5,796,347 to 5,797,774
_26845
Position (kb) 5794
5795
5796 Strain fitness (log2 ratio) -1
0
1 at 5793.696 kb on + strand at 5793.696 kb on + strand at 5793.835 kb on + strand, within PS417_26830 at 5793.937 kb on + strand, within PS417_26830 at 5793.938 kb on - strand, within PS417_26830 at 5793.938 kb on - strand, within PS417_26830 at 5794.012 kb on + strand, within PS417_26830 at 5794.012 kb on + strand, within PS417_26830 at 5794.012 kb on + strand, within PS417_26830 at 5794.013 kb on - strand, within PS417_26830 at 5794.013 kb on - strand, within PS417_26830 at 5794.165 kb on + strand, within PS417_26830 at 5794.198 kb on + strand, within PS417_26830 at 5794.199 kb on - strand, within PS417_26830 at 5794.354 kb on + strand, within PS417_26830 at 5794.357 kb on + strand, within PS417_26830 at 5794.381 kb on + strand, within PS417_26830 at 5794.455 kb on - strand, within PS417_26830 at 5794.552 kb on + strand at 5794.553 kb on - strand at 5794.555 kb on + strand at 5794.555 kb on + strand at 5794.569 kb on + strand at 5794.626 kb on + strand at 5794.627 kb on - strand at 5794.702 kb on + strand at 5794.703 kb on - strand at 5794.703 kb on - strand at 5794.709 kb on + strand at 5794.908 kb on - strand, within PS417_26835 at 5795.213 kb on - strand, within PS417_26835 at 5795.213 kb on - strand, within PS417_26835 at 5795.506 kb on + strand at 5795.530 kb on + strand at 5795.531 kb on - strand at 5795.580 kb on + strand at 5795.581 kb on - strand at 5795.645 kb on - strand, within PS417_26840 at 5795.806 kb on + strand, within PS417_26840 at 5795.807 kb on - strand, within PS417_26840 at 5795.807 kb on - strand, within PS417_26840 at 5796.019 kb on + strand, within PS417_26840 at 5796.019 kb on + strand, within PS417_26840 at 5796.067 kb on + strand, within PS417_26840 at 5796.067 kb on + strand, within PS417_26840 at 5796.067 kb on + strand, within PS417_26840 at 5796.187 kb on - strand at 5796.218 kb on - strand at 5796.218 kb on - strand at 5796.258 kb on - strand at 5796.275 kb on + strand at 5796.275 kb on + strand at 5796.294 kb on - strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.326 kb on - strand at 5796.328 kb on - strand at 5796.366 kb on - strand at 5796.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 5,793,696 + -0.8 5,793,696 + -1.4 5,793,835 + PS417_26830 0.23 -0.1 5,793,937 + PS417_26830 0.33 -1.1 5,793,938 - PS417_26830 0.33 +0.5 5,793,938 - PS417_26830 0.33 -0.6 5,794,012 + PS417_26830 0.41 -0.3 5,794,012 + PS417_26830 0.41 -1.1 5,794,012 + PS417_26830 0.41 +0.4 5,794,013 - PS417_26830 0.41 +0.4 5,794,013 - PS417_26830 0.41 -0.8 5,794,165 + PS417_26830 0.56 +0.4 5,794,198 + PS417_26830 0.59 -0.3 5,794,199 - PS417_26830 0.59 +1.0 5,794,354 + PS417_26830 0.75 -0.1 5,794,357 + PS417_26830 0.75 +1.1 5,794,381 + PS417_26830 0.78 +0.2 5,794,455 - PS417_26830 0.85 +0.3 5,794,552 + -0.5 5,794,553 - +0.0 5,794,555 + -0.5 5,794,555 + +0.8 5,794,569 + -0.1 5,794,626 + -0.1 5,794,627 - -0.7 5,794,702 + -0.4 5,794,703 - +0.0 5,794,703 - -0.6 5,794,709 + +0.3 5,794,908 - PS417_26835 0.32 -0.0 5,795,213 - PS417_26835 0.67 -0.9 5,795,213 - PS417_26835 0.67 +1.3 5,795,506 + +0.2 5,795,530 + +0.3 5,795,531 - -0.8 5,795,580 + +0.5 5,795,581 - -0.6 5,795,645 - PS417_26840 0.17 -1.7 5,795,806 + PS417_26840 0.41 -0.7 5,795,807 - PS417_26840 0.41 +1.1 5,795,807 - PS417_26840 0.41 -0.3 5,796,019 + PS417_26840 0.73 +0.1 5,796,019 + PS417_26840 0.73 -0.2 5,796,067 + PS417_26840 0.80 +1.7 5,796,067 + PS417_26840 0.80 +0.6 5,796,067 + PS417_26840 0.80 -0.5 5,796,187 - +0.1 5,796,218 - -0.0 5,796,218 - -0.6 5,796,258 - -0.1 5,796,275 + -1.0 5,796,275 + +0.3 5,796,294 - +0.5 5,796,325 + +0.8 5,796,325 + -1.1 5,796,325 + +0.2 5,796,325 + +0.0 5,796,325 + +0.2 5,796,326 - -0.2 5,796,328 - -0.3 5,796,366 - +0.1 5,796,366 - -0.4
Or see this region's nucleotide sequence