Strain Fitness in Pseudomonas simiae WCS417 around PS417_02575

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02565 and PS417_02570 are separated by 28 nucleotidesPS417_02570 and PS417_02575 are separated by 36 nucleotidesPS417_02575 and PS417_02580 are separated by 18 nucleotidesPS417_02580 and PS417_02585 are separated by 109 nucleotides PS417_02565: PS417_02565 - 30S ribosomal protein S6, at 585,641 to 586,063 _02565 PS417_02570: PS417_02570 - 30S ribosomal protein S18, at 586,092 to 586,322 _02570 PS417_02575: PS417_02575 - membrane protein, at 586,359 to 587,252 _02575 PS417_02580: PS417_02580 - 50S ribosomal protein L9, at 587,271 to 587,717 _02580 PS417_02585: PS417_02585 - DNA helicase, at 587,827 to 589,224 _02585 Position (kb) 586 587 588Strain fitness (log2 ratio) -2 -1 0 1at 585.388 kb on + strandat 585.463 kb on + strandat 586.884 kb on + strand, within PS417_02575at 587.121 kb on + strand, within PS417_02575at 587.121 kb on + strand, within PS417_02575at 587.121 kb on + strand, within PS417_02575at 587.121 kb on + strand, within PS417_02575

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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585,388 + -0.6
585,463 + -0.2
586,884 + PS417_02575 0.59 -1.6
587,121 + PS417_02575 0.85 -2.0
587,121 + PS417_02575 0.85 -0.5
587,121 + PS417_02575 0.85 +0.0
587,121 + PS417_02575 0.85 +0.2

Or see this region's nucleotide sequence