Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25165 and PS417_25170 are separated by 280 nucleotides PS417_25170 and PS417_25175 are separated by 144 nucleotides
PS417_25165: PS417_25165 - chitin-binding protein, at 5,454,346 to 5,454,981
_25165
PS417_25170: PS417_25170 - FAD-binding protein, at 5,455,262 to 5,456,950
_25170
PS417_25175: PS417_25175 - hypothetical protein, at 5,457,095 to 5,457,595
_25175
Position (kb) 5455
5456
5457 Strain fitness (log2 ratio) -1
0
1
2
3 at 5454.331 kb on + strand at 5454.525 kb on - strand at 5454.615 kb on + strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.801 kb on + strand, within PS417_25165 at 5454.975 kb on + strand at 5454.976 kb on - strand at 5455.022 kb on + strand at 5455.048 kb on + strand at 5455.049 kb on - strand at 5455.086 kb on + strand at 5455.087 kb on - strand at 5455.087 kb on - strand at 5455.097 kb on + strand at 5455.100 kb on - strand at 5455.148 kb on + strand at 5455.392 kb on + strand at 5455.392 kb on + strand at 5455.396 kb on + strand at 5455.397 kb on - strand at 5455.397 kb on - strand at 5455.397 kb on - strand at 5455.481 kb on + strand, within PS417_25170 at 5455.482 kb on - strand, within PS417_25170 at 5455.622 kb on - strand, within PS417_25170 at 5455.625 kb on + strand, within PS417_25170 at 5455.661 kb on + strand, within PS417_25170 at 5455.673 kb on + strand, within PS417_25170 at 5455.695 kb on + strand, within PS417_25170 at 5455.846 kb on - strand, within PS417_25170 at 5456.058 kb on - strand, within PS417_25170 at 5456.060 kb on + strand, within PS417_25170 at 5456.102 kb on - strand, within PS417_25170 at 5456.189 kb on + strand, within PS417_25170 at 5456.190 kb on - strand, within PS417_25170 at 5456.243 kb on - strand, within PS417_25170 at 5456.643 kb on - strand, within PS417_25170 at 5456.726 kb on - strand, within PS417_25170 at 5456.765 kb on - strand, within PS417_25170 at 5456.791 kb on + strand at 5456.796 kb on + strand at 5456.997 kb on - strand at 5457.070 kb on + strand at 5457.071 kb on - strand at 5457.214 kb on - strand, within PS417_25175 at 5457.300 kb on - strand, within PS417_25175 at 5457.332 kb on + strand, within PS417_25175 at 5457.338 kb on - strand, within PS417_25175 at 5457.342 kb on - strand, within PS417_25175 at 5457.407 kb on - strand, within PS417_25175 at 5457.514 kb on + strand, within PS417_25175 at 5457.671 kb on + strand at 5457.919 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 5,454,331 + +1.6 5,454,525 - +1.7 5,454,615 + PS417_25165 0.42 +0.0 5,454,771 - PS417_25165 0.67 +0.5 5,454,771 - PS417_25165 0.67 +0.1 5,454,771 - PS417_25165 0.67 +0.3 5,454,771 - PS417_25165 0.67 +0.6 5,454,801 + PS417_25165 0.72 +1.5 5,454,975 + +0.7 5,454,976 - +0.2 5,455,022 + +0.1 5,455,048 + +0.2 5,455,049 - +0.3 5,455,086 + +1.7 5,455,087 - +0.2 5,455,087 - +0.2 5,455,097 + -1.0 5,455,100 - -0.1 5,455,148 + -0.7 5,455,392 + +0.5 5,455,392 + -0.2 5,455,396 + +0.2 5,455,397 - +0.6 5,455,397 - +0.6 5,455,397 - +0.2 5,455,481 + PS417_25170 0.13 +0.4 5,455,482 - PS417_25170 0.13 +0.8 5,455,622 - PS417_25170 0.21 +0.3 5,455,625 + PS417_25170 0.21 -0.2 5,455,661 + PS417_25170 0.24 +0.2 5,455,673 + PS417_25170 0.24 +1.1 5,455,695 + PS417_25170 0.26 -0.2 5,455,846 - PS417_25170 0.35 +1.3 5,456,058 - PS417_25170 0.47 +0.3 5,456,060 + PS417_25170 0.47 +0.6 5,456,102 - PS417_25170 0.50 +1.2 5,456,189 + PS417_25170 0.55 +0.6 5,456,190 - PS417_25170 0.55 -0.7 5,456,243 - PS417_25170 0.58 +0.9 5,456,643 - PS417_25170 0.82 +1.0 5,456,726 - PS417_25170 0.87 +0.0 5,456,765 - PS417_25170 0.89 +2.0 5,456,791 + +0.2 5,456,796 + +1.7 5,456,997 - -0.0 5,457,070 + -0.4 5,457,071 - +0.7 5,457,214 - PS417_25175 0.24 -0.7 5,457,300 - PS417_25175 0.41 -0.2 5,457,332 + PS417_25175 0.47 -0.3 5,457,338 - PS417_25175 0.49 +1.2 5,457,342 - PS417_25175 0.49 +3.0 5,457,407 - PS417_25175 0.62 +1.2 5,457,514 + PS417_25175 0.84 +0.8 5,457,671 + -0.2 5,457,919 - +0.8
Or see this region's nucleotide sequence