Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25040 and PS417_25045 are separated by 14 nucleotides PS417_25045 and PS417_25055 are separated by 717 nucleotides
PS417_25040: PS417_25040 - hypothetical protein, at 5,431,016 to 5,431,270
_25040
PS417_25045: PS417_25045 - hypothetical protein, at 5,431,285 to 5,431,584
_25045
PS417_25055: PS417_25055 - transposase, at 5,432,302 to 5,432,499
_25055
Position (kb) 5431
5432 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5430.331 kb on + strand at 5430.331 kb on + strand at 5430.332 kb on - strand at 5430.332 kb on - strand at 5430.332 kb on - strand at 5430.390 kb on + strand at 5430.390 kb on + strand at 5430.391 kb on - strand at 5430.409 kb on + strand at 5430.409 kb on + strand at 5430.467 kb on + strand at 5430.467 kb on + strand at 5430.467 kb on + strand at 5430.468 kb on - strand at 5430.468 kb on - strand at 5430.485 kb on + strand at 5430.492 kb on - strand at 5430.506 kb on - strand at 5430.550 kb on + strand at 5430.550 kb on + strand at 5430.551 kb on - strand at 5430.624 kb on + strand at 5430.627 kb on + strand at 5430.628 kb on - strand at 5430.736 kb on + strand at 5430.781 kb on + strand at 5430.782 kb on - strand at 5430.782 kb on - strand at 5430.796 kb on + strand at 5430.796 kb on + strand at 5430.952 kb on + strand at 5430.952 kb on + strand at 5430.953 kb on - strand at 5430.953 kb on - strand at 5430.953 kb on - strand at 5430.954 kb on + strand at 5430.955 kb on - strand at 5430.955 kb on - strand at 5430.955 kb on - strand at 5430.961 kb on - strand at 5431.062 kb on + strand at 5431.062 kb on + strand, within PS417_25040 at 5431.062 kb on + strand, within PS417_25040 at 5431.063 kb on - strand, within PS417_25040 at 5431.063 kb on - strand, within PS417_25040 at 5431.063 kb on - strand, within PS417_25040 at 5431.063 kb on - strand, within PS417_25040 at 5431.063 kb on - strand, within PS417_25040 at 5431.071 kb on + strand, within PS417_25040 at 5431.071 kb on + strand, within PS417_25040 at 5431.071 kb on + strand, within PS417_25040 at 5431.072 kb on - strand, within PS417_25040 at 5431.072 kb on - strand, within PS417_25040 at 5431.175 kb on + strand, within PS417_25040 at 5431.184 kb on + strand, within PS417_25040 at 5431.264 kb on + strand at 5431.286 kb on + strand at 5431.286 kb on + strand at 5431.286 kb on + strand at 5431.287 kb on - strand at 5431.287 kb on - strand at 5431.287 kb on - strand at 5431.373 kb on + strand, within PS417_25045 at 5431.373 kb on + strand, within PS417_25045 at 5431.373 kb on + strand, within PS417_25045 at 5431.373 kb on + strand, within PS417_25045 at 5431.374 kb on - strand, within PS417_25045 at 5431.374 kb on - strand, within PS417_25045 at 5431.374 kb on - strand, within PS417_25045 at 5431.375 kb on + strand, within PS417_25045 at 5431.375 kb on + strand, within PS417_25045 at 5431.470 kb on + strand, within PS417_25045 at 5431.470 kb on + strand, within PS417_25045 at 5431.471 kb on - strand, within PS417_25045 at 5431.471 kb on - strand, within PS417_25045 at 5431.485 kb on + strand, within PS417_25045 at 5431.486 kb on - strand, within PS417_25045 at 5431.486 kb on - strand, within PS417_25045 at 5431.525 kb on + strand, within PS417_25045 at 5431.526 kb on - strand, within PS417_25045 at 5431.526 kb on - strand, within PS417_25045 at 5431.559 kb on + strand at 5431.559 kb on + strand at 5431.611 kb on + strand at 5431.612 kb on - strand at 5431.628 kb on + strand at 5431.628 kb on + strand at 5431.629 kb on - strand at 5431.629 kb on - strand at 5431.697 kb on + strand at 5431.697 kb on + strand at 5431.698 kb on - strand at 5431.698 kb on - strand at 5431.775 kb on + strand at 5431.838 kb on + strand at 5431.867 kb on - strand at 5431.951 kb on - strand at 5431.951 kb on - strand at 5431.967 kb on + strand at 5431.967 kb on + strand at 5431.980 kb on + strand at 5431.980 kb on + strand at 5432.102 kb on + strand at 5432.234 kb on + strand at 5432.234 kb on + strand at 5432.235 kb on - strand at 5432.257 kb on + strand at 5432.257 kb on + strand at 5432.264 kb on + strand at 5432.264 kb on + strand at 5432.356 kb on - strand, within PS417_25055 at 5432.399 kb on + strand, within PS417_25055 at 5432.400 kb on - strand, within PS417_25055 at 5432.400 kb on - strand, within PS417_25055 at 5432.408 kb on + strand, within PS417_25055 at 5432.408 kb on + strand, within PS417_25055 at 5432.483 kb on + strand at 5432.483 kb on + strand at 5432.489 kb on - strand at 5432.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 5,430,331 + -0.2 5,430,331 + +0.4 5,430,332 - -2.4 5,430,332 - -0.3 5,430,332 - +0.2 5,430,390 + +2.2 5,430,390 + -0.3 5,430,391 - -0.5 5,430,409 + -0.1 5,430,409 + -0.5 5,430,467 + +0.3 5,430,467 + +1.3 5,430,467 + +0.0 5,430,468 - +0.5 5,430,468 - +0.5 5,430,485 + -0.5 5,430,492 - +0.6 5,430,506 - +0.4 5,430,550 + +0.3 5,430,550 + +0.0 5,430,551 - -0.0 5,430,624 + +0.8 5,430,627 + +0.9 5,430,628 - -0.1 5,430,736 + +0.5 5,430,781 + +0.1 5,430,782 - +0.4 5,430,782 - +0.1 5,430,796 + -1.3 5,430,796 + -0.0 5,430,952 + -0.5 5,430,952 + +1.4 5,430,953 - +0.0 5,430,953 - +0.3 5,430,953 - +0.0 5,430,954 + +0.5 5,430,955 - -0.1 5,430,955 - -0.5 5,430,955 - -0.9 5,430,961 - -0.2 5,431,062 + -1.2 5,431,062 + PS417_25040 0.18 -0.6 5,431,062 + PS417_25040 0.18 +0.6 5,431,063 - PS417_25040 0.18 +0.2 5,431,063 - PS417_25040 0.18 -0.4 5,431,063 - PS417_25040 0.18 -0.6 5,431,063 - PS417_25040 0.18 -0.2 5,431,063 - PS417_25040 0.18 +0.3 5,431,071 + PS417_25040 0.22 +0.4 5,431,071 + PS417_25040 0.22 +0.3 5,431,071 + PS417_25040 0.22 -0.7 5,431,072 - PS417_25040 0.22 +0.7 5,431,072 - PS417_25040 0.22 +0.6 5,431,175 + PS417_25040 0.62 +0.1 5,431,184 + PS417_25040 0.66 +0.0 5,431,264 + +1.1 5,431,286 + -0.0 5,431,286 + +0.2 5,431,286 + +0.1 5,431,287 - -0.1 5,431,287 - +0.0 5,431,287 - -0.2 5,431,373 + PS417_25045 0.29 +0.7 5,431,373 + PS417_25045 0.29 +1.0 5,431,373 + PS417_25045 0.29 +0.7 5,431,373 + PS417_25045 0.29 +0.3 5,431,374 - PS417_25045 0.30 +0.2 5,431,374 - PS417_25045 0.30 +1.4 5,431,374 - PS417_25045 0.30 +0.2 5,431,375 + PS417_25045 0.30 +0.9 5,431,375 + PS417_25045 0.30 +0.2 5,431,470 + PS417_25045 0.62 +0.5 5,431,470 + PS417_25045 0.62 +1.5 5,431,471 - PS417_25045 0.62 +0.6 5,431,471 - PS417_25045 0.62 +0.1 5,431,485 + PS417_25045 0.67 +0.2 5,431,486 - PS417_25045 0.67 -1.2 5,431,486 - PS417_25045 0.67 +0.9 5,431,525 + PS417_25045 0.80 +1.2 5,431,526 - PS417_25045 0.80 +0.0 5,431,526 - PS417_25045 0.80 +0.6 5,431,559 + -0.5 5,431,559 + -0.3 5,431,611 + -1.9 5,431,612 - -0.4 5,431,628 + +1.2 5,431,628 + +0.0 5,431,629 - +0.3 5,431,629 - -1.0 5,431,697 + -0.6 5,431,697 + -1.3 5,431,698 - -0.0 5,431,698 - +1.0 5,431,775 + +0.4 5,431,838 + +1.0 5,431,867 - +0.2 5,431,951 - +0.2 5,431,951 - +0.3 5,431,967 + +0.4 5,431,967 + -2.5 5,431,980 + -0.1 5,431,980 + +1.0 5,432,102 + +0.0 5,432,234 + +1.6 5,432,234 + +0.6 5,432,235 - -0.2 5,432,257 + +0.4 5,432,257 + +1.0 5,432,264 + -1.3 5,432,264 + -0.0 5,432,356 - PS417_25055 0.27 +0.1 5,432,399 + PS417_25055 0.49 -0.6 5,432,400 - PS417_25055 0.49 +0.3 5,432,400 - PS417_25055 0.49 +0.1 5,432,408 + PS417_25055 0.54 +0.8 5,432,408 + PS417_25055 0.54 +0.5 5,432,483 + -0.4 5,432,483 + -0.2 5,432,489 - +0.3 5,432,547 + -0.8
Or see this region's nucleotide sequence