Strain Fitness in Pseudomonas simiae WCS417 around PS417_25035

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
5,428,245	-				-0.4
5,428,245	-				+0.0
5,428,258	+				+0.6
5,428,259	-				-1.4
5,428,259	-				-2.6
5,428,280	+				-0.1
5,428,281	-				-0.0
5,428,281	-				-0.3
5,428,281	-				+0.2
5,428,350	-				+1.1
5,428,367	+				-0.3
5,428,368	-				+0.5
5,428,368	-				+0.5
5,428,375	+				-0.3
5,428,570	+				+1.0
5,428,601	+				-0.0
5,428,602	-				-1.6
5,428,602	-				+0.8
5,428,612	-				+1.6
5,428,674	+				-0.7
5,428,675	-				-0.1
5,428,695	+				+0.1
5,428,700	-				+0.2
5,428,741	+				+0.0
5,428,742	-				-0.1
5,428,810	-				-0.6
5,428,815	+				+0.1
5,428,883	+		PS417_25030	0.27	-1.0
5,428,884	-		PS417_25030	0.27	-0.3
5,428,922	+		PS417_25030	0.45	-1.5
5,428,992	+		PS417_25030	0.78	+0.2
5,428,993	-		PS417_25030	0.78	-0.2
5,428,995	+		PS417_25030	0.79	-0.7
5,428,996	-		PS417_25030	0.80	-1.8
5,429,001	-		PS417_25030	0.82	+1.3
5,429,181	+				-0.9
5,429,181	+				+0.7
5,429,181	+				-0.4
5,429,235	-				-0.1
5,429,266	+		PS417_25035	0.12	-0.5
5,429,270	-		PS417_25035	0.12	+0.7
5,429,322	-		PS417_25035	0.17	+0.3
5,429,386	+		PS417_25035	0.23	+1.1
5,429,386	+		PS417_25035	0.23	+0.4
5,429,422	-		PS417_25035	0.27	-0.6
5,429,493	-		PS417_25035	0.34	+1.0
5,429,493	-		PS417_25035	0.34	+0.6
5,429,505	+		PS417_25035	0.35	+1.2
5,429,637	+		PS417_25035	0.47	+0.2
5,429,638	-		PS417_25035	0.48	+0.7
5,429,676	+		PS417_25035	0.51	+0.2
5,429,754	+				-0.2
5,429,755	-		PS417_25035	0.59	+0.8
5,429,755	-		PS417_25035	0.59	-0.1
5,429,767	+		PS417_25035	0.60	+0.4
5,429,779	+		PS417_25035	0.61	+0.7
5,429,881	+		PS417_25035	0.71	+0.1
5,429,887	-		PS417_25035	0.72	+0.7
5,429,969	+		PS417_25035	0.79	-0.6
5,430,118	+				+0.6
5,430,160	-				-0.0
5,430,179	+				+0.4
5,430,179	+				-0.4
5,430,234	+				+0.1
5,430,255	+				-0.1
5,430,331	+				-0.2
5,430,331	+				+0.4
5,430,332	-				-2.4
5,430,332	-				-0.3
5,430,332	-				+0.2
5,430,390	+				+2.2
5,430,390	+				-0.3
5,430,391	-				-0.5
5,430,409	+				-0.1
5,430,409	+				-0.5
5,430,467	+				+0.3
5,430,467	+				+1.3
5,430,467	+				+0.0
5,430,468	-				+0.5
5,430,468	-				+0.5
5,430,485	+				-0.5
5,430,492	-				+0.6
5,430,506	-				+0.4
5,430,550	+				+0.3
5,430,550	+				+0.0
5,430,551	-				-0.0
5,430,624	+				+0.8
5,430,627	+				+0.9
5,430,628	-				-0.1
5,430,736	+				+0.5
5,430,781	+				+0.1
5,430,782	-				+0.4
5,430,782	-				+0.1
5,430,796	+				-1.3
5,430,796	+				-0.0
5,430,952	+				-0.5
5,430,952	+				+1.4
5,430,953	-				+0.0
5,430,953	-				+0.3
5,430,953	-				+0.0
5,430,954	+				+0.5
5,430,955	-				-0.1
5,430,955	-				-0.5
5,430,955	-				-0.9
5,430,961	-				-0.2
5,431,062	+				-1.2
5,431,062	+		PS417_25040	0.18	-0.6
5,431,062	+		PS417_25040	0.18	+0.6
5,431,063	-		PS417_25040	0.18	+0.2
5,431,063	-		PS417_25040	0.18	-0.4
5,431,063	-		PS417_25040	0.18	-0.6
5,431,063	-		PS417_25040	0.18	-0.2
5,431,063	-		PS417_25040	0.18	+0.3
5,431,071	+		PS417_25040	0.22	+0.4
5,431,071	+		PS417_25040	0.22	+0.3
5,431,071	+		PS417_25040	0.22	-0.7
5,431,072	-		PS417_25040	0.22	+0.7
5,431,072	-		PS417_25040	0.22	+0.6
5,431,175	+		PS417_25040	0.62	+0.1