Strain Fitness in Pseudomonas simiae WCS417 around PS417_25025

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
5,426,465	+				-0.0
5,426,718	+				+0.0
5,426,982	+				-0.6
5,427,083	+				-0.7
5,427,084	-				+1.9
5,427,084	-				+0.4
5,427,124	+				+0.2
5,427,124	+				-0.1
5,427,188	+				+0.8
5,427,188	+				-0.1
5,427,189	-				-0.6
5,427,189	-				-0.2
5,427,189	-				-1.2
5,427,218	-				+0.7
5,427,307	-				+1.1
5,427,343	+				-0.2
5,427,343	+				+1.6
5,427,343	+				+0.5
5,427,343	+				+0.1
5,427,423	+				+0.4
5,427,423	+				-0.1
5,427,533	+		PS417_25025	0.37	+0.4
5,427,533	+		PS417_25025	0.37	+1.4
5,427,534	-		PS417_25025	0.38	+0.1
5,427,541	+		PS417_25025	0.40	-1.2
5,427,541	+		PS417_25025	0.40	+0.1
5,427,541	+		PS417_25025	0.40	+0.2
5,427,541	+		PS417_25025	0.40	+1.1
5,427,542	-		PS417_25025	0.41	-0.3
5,427,542	-		PS417_25025	0.41	+0.2
5,427,542	-		PS417_25025	0.41	+0.4
5,427,564	+		PS417_25025	0.48	-0.0
5,427,565	-		PS417_25025	0.49	+0.4
5,427,679	-		PS417_25025	0.90	-0.3
5,427,679	-		PS417_25025	0.90	+0.6
5,427,679	-		PS417_25025	0.90	+0.1
5,427,701	+				+1.2
5,427,702	-				+0.1
5,427,734	+				+0.1
5,427,735	-				+0.4
5,427,748	-				+0.1
5,427,748	-				-0.7
5,427,765	+				+0.2
5,427,766	-				-0.6
5,427,766	-				-1.3
5,427,833	-				-0.0
5,427,833	-				-0.0
5,427,896	+				+0.5
5,427,896	+				-0.4
5,427,896	+				-0.2
5,427,897	-				+0.2
5,427,897	-				-0.2
5,427,897	-				+0.2
5,427,897	-				-1.0
5,427,897	-				-0.2
5,427,897	-				+0.4
5,428,078	+				+0.4
5,428,081	+				+0.4
5,428,093	-				-0.8
5,428,245	-				-0.4
5,428,245	-				+0.0
5,428,258	+				+0.6
5,428,259	-				-1.4
5,428,259	-				-2.6
5,428,280	+				-0.1
5,428,281	-				-0.0
5,428,281	-				-0.3
5,428,281	-				+0.2
5,428,350	-				+1.1
5,428,367	+				-0.3
5,428,368	-				+0.5
5,428,368	-				+0.5
5,428,375	+				-0.3
5,428,570	+				+1.0
5,428,601	+				-0.0
5,428,602	-				-1.6
5,428,602	-				+0.8
5,428,612	-				+1.6
5,428,674	+				-0.7
5,428,675	-				-0.1
5,428,695	+				+0.1
5,428,700	-				+0.2