Strain Fitness in Pseudomonas simiae WCS417 around PS417_23545

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
5,092,519	+		PS417_23535	0.68	-0.1
5,092,519	+		PS417_23535	0.68	-0.5
5,092,520	-		PS417_23535	0.68	+0.7
5,092,520	-		PS417_23535	0.68	-1.3
5,092,520	-				-1.0
5,092,520	-		PS417_23535	0.68	+0.3
5,092,550	-		PS417_23535	0.74	-0.1
5,092,722	+				+0.3
5,092,722	+				-0.6
5,092,722	+				-1.5
5,092,745	+				-2.2
5,092,746	-				+0.8
5,092,854	+		PS417_23540	0.17	-0.3
5,092,854	+		PS417_23540	0.17	-0.5
5,092,855	-		PS417_23540	0.17	+0.8
5,092,855	-		PS417_23540	0.17	+0.0
5,092,857	-		PS417_23540	0.18	+0.3
5,092,857	-		PS417_23540	0.18	-0.6
5,093,076	+		PS417_23540	0.65	-0.0
5,093,076	+		PS417_23540	0.65	-0.6
5,093,077	-		PS417_23540	0.65	-0.1
5,093,245	-				-0.4
5,093,245	-				-0.6
5,093,304	+				-2.3
5,093,305	-				-3.3
5,093,305	-				-2.9
5,093,371	-		PS417_23545	0.10	-3.5
5,093,371	-		PS417_23545	0.10	-5.7
5,093,418	-		PS417_23545	0.15	-3.5
5,093,418	-		PS417_23545	0.15	-2.9
5,094,335	+				-5.5
5,094,386	+				-6.0
5,094,387	-				-2.0
5,094,387	-				-0.3
5,094,387	-				-0.3
5,094,496	+				+0.2