Strain Fitness in Pseudomonas simiae WCS417 around PS417_22800

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,939,539	-				+0.2
4,939,553	-				+0.1
4,939,553	-				+0.2
4,939,562	-				+2.2
4,939,562	-				-1.3
4,939,603	+				+0.5
4,939,843	+		PS417_22795	0.42	-0.3
4,940,069	-		PS417_22795	0.89	-0.5
4,940,163	+				+0.9
4,940,164	-				-0.4
4,940,164	-				-0.5
4,940,254	+				+0.2
4,940,297	+		PS417_22800	0.15	+1.4
4,940,297	+		PS417_22800	0.15	+1.8
4,940,299	+		PS417_22800	0.15	-0.1
4,940,313	+		PS417_22800	0.17	-2.0
4,940,390	+				-0.8
4,940,516	+		PS417_22800	0.45	-0.6
4,940,570	+				+1.4
4,940,571	-		PS417_22800	0.52	+0.1
4,940,591	+		PS417_22800	0.55	+0.3
4,940,661	-		PS417_22800	0.65	+1.8
4,940,804	+		PS417_22800	0.84	+0.4
4,940,805	-		PS417_22800	0.84	+0.0
4,940,922	+				+0.1
4,940,923	-				+0.6
4,940,923	-				-1.1
4,940,980	+				-1.4
4,940,980	+				-0.3
4,940,981	-				-0.2
4,941,174	+		PS417_22805	0.15	-0.4
4,941,175	-		PS417_22805	0.15	+0.5
4,941,255	+		PS417_22805	0.23	+0.6
4,941,255	+		PS417_22805	0.23	+0.3
4,941,255	+		PS417_22805	0.23	-0.8
4,941,255	+		PS417_22805	0.23	-1.1
4,941,256	-		PS417_22805	0.23	-0.2
4,941,256	-		PS417_22805	0.23	+0.4
4,941,279	+		PS417_22805	0.25	+0.0
4,941,280	-				+0.8
4,941,280	-		PS417_22805	0.25	+0.0
4,941,307	-		PS417_22805	0.28	+1.2
4,941,307	-		PS417_22805	0.28	-0.7
4,941,312	+		PS417_22805	0.28	+0.3
4,941,375	+		PS417_22805	0.35	-0.1
4,941,435	+		PS417_22805	0.41	-0.7
4,941,489	+		PS417_22805	0.46	-0.3
4,941,489	+		PS417_22805	0.46	-0.3
4,941,518	-		PS417_22805	0.49	-0.4
4,941,544	-		PS417_22805	0.51	+0.4
4,941,544	-		PS417_22805	0.51	+1.1
4,941,636	+		PS417_22805	0.61	+0.3
4,941,636	+		PS417_22805	0.61	+0.4
4,941,758	+		PS417_22805	0.73	+0.3
4,941,759	-		PS417_22805	0.73	+0.0
4,941,759	-		PS417_22805	0.73	+1.1
4,941,807	+		PS417_22805	0.77	-0.0
4,941,889	-		PS417_22805	0.86	-0.2