Strain Fitness in Pseudomonas simiae WCS417 around PS417_20925

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,548,961	+		PS417_20920	0.47	+0.1
4,548,961	+		PS417_20920	0.47	-0.7
4,548,962	-		PS417_20920	0.47	-0.2
4,548,962	-		PS417_20920	0.47	+0.2
4,549,042	+		PS417_20920	0.52	-0.1
4,549,042	+		PS417_20920	0.52	+0.1
4,549,042	+		PS417_20920	0.52	+0.1
4,549,042	+		PS417_20920	0.52	-0.1
4,549,042	+		PS417_20920	0.52	-0.4
4,549,043	-		PS417_20920	0.52	+0.1
4,549,043	-		PS417_20920	0.52	-1.8
4,549,070	-		PS417_20920	0.54	+0.2
4,549,215	+		PS417_20920	0.64	+0.9
4,549,215	+		PS417_20920	0.64	+0.2
4,549,215	+		PS417_20920	0.64	-0.1
4,549,215	+		PS417_20920	0.64	-2.2
4,549,219	+		PS417_20920	0.64	+0.1
4,549,220	-		PS417_20920	0.65	-0.1
4,549,220	-		PS417_20920	0.65	+0.5
4,549,224	+		PS417_20920	0.65	-0.2
4,549,225	-		PS417_20920	0.65	+0.5
4,549,465	+		PS417_20920	0.81	-0.7
4,549,466	-		PS417_20920	0.81	-0.5
4,549,561	-		PS417_20920	0.88	-0.5
4,549,614	+				-0.3
4,549,614	+				+0.3
4,549,615	-				+0.9
4,549,735	+				+0.4
4,549,919	-				+0.1
4,549,919	-				+1.3
4,550,043	+				+0.6
4,550,044	-				+1.0
4,550,063	-				+1.8
4,550,063	-				+0.5
4,550,281	-		PS417_20925	0.17	-0.8
4,550,311	+		PS417_20925	0.19	-0.8
4,550,312	-		PS417_20925	0.19	-0.6
4,550,393	+		PS417_20925	0.22	-0.4
4,550,404	+		PS417_20925	0.23	-1.4
4,550,420	+		PS417_20925	0.23	-0.8
4,550,421	-		PS417_20925	0.23	+0.1
4,550,421	-		PS417_20925	0.23	-0.5
4,550,610	+		PS417_20925	0.31	-1.0
4,550,611	-		PS417_20925	0.31	-0.2
4,550,611	-		PS417_20925	0.31	+0.8
4,550,612	+		PS417_20925	0.31	-0.7
4,550,613	-		PS417_20925	0.31	-0.8
4,550,613	-		PS417_20925	0.31	-1.5
4,550,629	+		PS417_20925	0.32	+0.3
4,550,630	-		PS417_20925	0.32	-1.0
4,550,630	-		PS417_20925	0.32	+0.5
4,550,630	-		PS417_20925	0.32	-0.3
4,550,656	+				+0.5
4,550,657	-		PS417_20925	0.33	-1.1
4,550,657	-		PS417_20925	0.33	-1.1
4,550,764	+		PS417_20925	0.38	+0.1
4,550,795	-		PS417_20925	0.39	-1.2
4,551,093	-		PS417_20925	0.51	-0.0
4,551,263	-		PS417_20925	0.58	-0.1
4,551,263	-		PS417_20925	0.58	+0.3
4,551,373	+		PS417_20925	0.63	+0.5
4,551,373	+		PS417_20925	0.63	+0.5
4,551,374	-		PS417_20925	0.63	-0.1
4,551,374	-		PS417_20925	0.63	-0.8
4,551,374	-		PS417_20925	0.63	+0.2
4,551,540	+				-0.2
4,551,540	+		PS417_20925	0.70	+0.1
4,551,541	-				-1.2
4,551,562	+		PS417_20925	0.71	-0.6
4,551,640	+		PS417_20925	0.74	-0.4
4,551,640	+		PS417_20925	0.74	-1.7
4,551,787	+		PS417_20925	0.80	-0.5
4,551,787	+		PS417_20925	0.80	-0.2
4,551,787	+		PS417_20925	0.80	-0.4
4,551,788	-		PS417_20925	0.80	-0.1
4,551,798	+		PS417_20925	0.81	-0.9
4,551,799	-		PS417_20925	0.81	-0.2
4,551,802	+		PS417_20925	0.81	-0.1
4,551,803	-		PS417_20925	0.81	-0.2
4,551,803	-		PS417_20925	0.81	-0.1
4,551,803	-		PS417_20925	0.81	+0.9
4,551,885	+		PS417_20925	0.84	-0.2
4,551,886	-		PS417_20925	0.84	-1.0
4,551,920	-		PS417_20925	0.86	-1.3
4,551,940	+		PS417_20925	0.87	+0.6
4,551,941	-		PS417_20925	0.87	-1.3
4,551,941	-		PS417_20925	0.87	+0.3
4,552,078	+				+0.5
4,552,166	+				-0.8
4,552,189	-				-0.6
4,552,223	+				-1.4
4,552,262	+				-0.2
4,552,262	+				+0.2
4,552,313	+				+0.2
4,552,313	+				+0.1
4,552,318	+				+0.4
4,552,318	+				-1.7
4,552,318	+				+0.5
4,552,319	-				-0.9
4,552,319	-				-0.1
4,552,321	-				+0.8
4,552,336	-				-0.3
4,552,336	-				+0.2
4,552,358	+				+0.3
4,552,401	-				-1.5
4,552,451	-				+2.1
4,552,845	-		PS417_20930	0.17	-0.2
4,552,919	+		PS417_20930	0.20	+1.0
4,552,920	-		PS417_20930	0.20	-0.4
4,552,926	-		PS417_20930	0.20	-0.6
4,553,258	+		PS417_20930	0.35	-1.1