Strain Fitness in Pseudomonas simiae WCS417 around PS417_20545

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
4,460,232	-		PS417_20540	0.67	-0.2
4,460,781	-				-0.6
4,460,843	+				-0.0
4,460,844	-				+0.1
4,460,844	-				+0.2
4,460,844	-				+0.1
4,460,845	+				+1.1
4,460,845	+				-0.3
4,460,845	+				+0.3
4,460,845	+				+0.1
4,460,846	-				+1.1
4,461,028	-				-0.0
4,461,086	-				-0.1
4,461,086	-				-0.4
4,461,107	-				-0.6
4,461,157	+				+0.5
4,461,158	-				-0.0
4,461,296	+		PS417_20545	0.25	-1.7
4,461,297	-		PS417_20545	0.25	-1.9
4,461,378	+		PS417_20545	0.36	-0.1
4,461,379	-		PS417_20545	0.36	-0.6
4,461,379	-		PS417_20545	0.36	-0.1
4,461,426	+		PS417_20545	0.43	-0.9
4,461,426	+		PS417_20545	0.43	+1.1
4,461,427	-		PS417_20545	0.43	-0.1
4,461,427	-		PS417_20545	0.43	-1.5
4,461,792	+				-0.5
4,461,822	+				-2.6
4,461,822	+				-0.0
4,461,890	+				+0.1
4,461,890	+				-1.7
4,461,891	-				-0.7
4,461,891	-				-1.0
4,461,928	+				-0.1
4,461,928	+				-0.2
4,461,948	-				+0.2
4,462,062	-		PS417_20550	0.10	-0.4
4,462,077	+		PS417_20550	0.12	-0.5
4,462,167	+		PS417_20550	0.20	+1.3
4,462,168	-		PS417_20550	0.20	-0.2
4,462,175	+		PS417_20550	0.20	-0.4
4,462,175	+		PS417_20550	0.20	+0.2
4,462,235	+		PS417_20550	0.26	+1.6
4,462,300	+		PS417_20550	0.31	-1.2
4,462,385	+		PS417_20550	0.39	+0.8
4,462,386	-		PS417_20550	0.39	+0.4
4,462,386	-		PS417_20550	0.39	-1.5
4,462,386	-		PS417_20550	0.39	-0.3
4,462,406	+		PS417_20550	0.41	-1.4
4,462,782	+		PS417_20550	0.74	+1.3
4,462,783	-		PS417_20550	0.74	-0.6
4,462,783	-		PS417_20550	0.74	-0.1
4,462,788	-		PS417_20550	0.75	+0.5
4,462,788	-		PS417_20550	0.75	-1.8
4,462,788	-		PS417_20550	0.75	+2.1
4,462,790	+		PS417_20550	0.75	-0.2
4,462,791	-		PS417_20550	0.75	+0.4