Strain Fitness in Pseudomonas simiae WCS417 around PS417_02025

Experiment: Vogels_fungal_media; pH 5.5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_02025 and PS417_02030 are separated by 26 nucleotides PS417_02025: PS417_02025 - hypothetical protein, at 455,921 to 456,373 _02025 PS417_02030: PS417_02030 - 3-oxoacyl-ACP synthase, at 456,400 to 457,626 _02030 Position (kb) 455 456 457Strain fitness (log2 ratio) -1 0 1 2at 455.868 kb on + strandat 456.045 kb on + strand, within PS417_02025at 456.046 kb on - strand, within PS417_02025at 456.046 kb on - strand, within PS417_02025at 456.046 kb on - strand, within PS417_02025at 456.072 kb on + strand, within PS417_02025at 456.096 kb on + strand, within PS417_02025at 456.097 kb on - strand, within PS417_02025at 456.144 kb on + strand, within PS417_02025at 456.467 kb on + strandat 456.503 kb on + strandat 456.557 kb on + strand, within PS417_02030at 456.557 kb on + strand, within PS417_02030at 456.557 kb on + strand, within PS417_02030at 456.733 kb on + strand, within PS417_02030at 456.734 kb on - strand, within PS417_02030at 457.011 kb on - strandat 457.224 kb on - strand, within PS417_02030at 457.224 kb on - strand, within PS417_02030at 457.224 kb on - strand, within PS417_02030

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
remove
455,868 + +2.1
456,045 + PS417_02025 0.27 +0.3
456,046 - PS417_02025 0.28 +1.0
456,046 - PS417_02025 0.28 -0.8
456,046 - PS417_02025 0.28 +1.3
456,072 + PS417_02025 0.33 +0.8
456,096 + PS417_02025 0.39 +0.3
456,097 - PS417_02025 0.39 -0.1
456,144 + PS417_02025 0.49 +0.7
456,467 + -0.0
456,503 + +0.2
456,557 + PS417_02030 0.13 +0.3
456,557 + PS417_02030 0.13 +0.1
456,557 + PS417_02030 0.13 +0.5
456,733 + PS417_02030 0.27 +0.5
456,734 - PS417_02030 0.27 +0.4
457,011 - +2.6
457,224 - PS417_02030 0.67 +0.3
457,224 - PS417_02030 0.67 -0.3
457,224 - PS417_02030 0.67 -0.2

Or see this region's nucleotide sequence