Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01795 and PS417_01800 are separated by 186 nucleotides PS417_01800 and PS417_01805 are separated by 219 nucleotides
PS417_01795: PS417_01795 - glucosyltransferase MdoH, at 399,275 to 401,845
_01795
PS417_01800: PS417_01800 - amino acid ABC transporter substrate-binding protein, at 402,032 to 402,832
_01800
PS417_01805: PS417_01805 - amino acid ABC transporter substrate-binding protein, at 403,052 to 403,849
_01805
Position (kb) 402
403 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 401.173 kb on - strand, within PS417_01795 at 401.450 kb on + strand, within PS417_01795 at 401.486 kb on + strand, within PS417_01795 at 401.487 kb on - strand, within PS417_01795 at 401.487 kb on - strand, within PS417_01795 at 401.487 kb on - strand, within PS417_01795 at 401.487 kb on - strand, within PS417_01795 at 401.895 kb on + strand at 402.006 kb on + strand at 402.045 kb on - strand at 402.063 kb on + strand at 402.063 kb on + strand at 402.161 kb on + strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand, within PS417_01800 at 402.162 kb on - strand at 402.598 kb on + strand, within PS417_01800 at 402.598 kb on + strand, within PS417_01800 at 402.598 kb on + strand, within PS417_01800 at 402.614 kb on + strand, within PS417_01800 at 402.728 kb on - strand, within PS417_01800 at 402.773 kb on + strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.774 kb on - strand at 402.839 kb on + strand at 402.848 kb on - strand at 402.929 kb on + strand at 402.930 kb on - strand at 402.930 kb on - strand at 402.930 kb on - strand at 403.025 kb on + strand at 403.025 kb on + strand at 403.026 kb on - strand at 403.026 kb on - strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.028 kb on - strand at 403.178 kb on + strand, within PS417_01805 at 403.179 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.551 kb on - strand at 403.551 kb on - strand, within PS417_01805 at 403.590 kb on + strand, within PS417_01805 at 403.591 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.638 kb on + strand, within PS417_01805 at 403.639 kb on - strand, within PS417_01805 at 403.677 kb on - strand, within PS417_01805 at 403.734 kb on - strand, within PS417_01805 at 403.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 401,173 - PS417_01795 0.74 +1.1 401,450 + PS417_01795 0.85 +0.3 401,486 + PS417_01795 0.86 -0.2 401,487 - PS417_01795 0.86 +0.6 401,487 - PS417_01795 0.86 +0.1 401,487 - PS417_01795 0.86 +1.3 401,487 - PS417_01795 0.86 +0.4 401,895 + -0.6 402,006 + -0.1 402,045 - -0.4 402,063 + +0.3 402,063 + +1.6 402,161 + PS417_01800 0.16 +0.6 402,162 - PS417_01800 0.16 -0.2 402,162 - PS417_01800 0.16 +1.1 402,162 - PS417_01800 0.16 +1.5 402,162 - PS417_01800 0.16 -0.0 402,162 - PS417_01800 0.16 -0.3 402,162 - +1.7 402,598 + PS417_01800 0.71 +0.4 402,598 + PS417_01800 0.71 +1.2 402,598 + PS417_01800 0.71 -1.9 402,614 + PS417_01800 0.73 +0.2 402,728 - PS417_01800 0.87 +1.1 402,773 + +1.0 402,774 - +2.1 402,774 - -2.4 402,774 - -1.8 402,774 - -0.7 402,839 + -1.4 402,848 - +0.5 402,929 + +0.7 402,930 - +0.5 402,930 - -1.2 402,930 - +1.3 403,025 + -1.2 403,025 + -0.1 403,026 - +0.0 403,026 - -0.1 403,027 + +0.6 403,027 + -0.6 403,027 + +0.8 403,027 + -0.5 403,028 - +0.2 403,178 + PS417_01805 0.16 +0.2 403,179 - PS417_01805 0.16 +0.3 403,458 - PS417_01805 0.51 +0.7 403,458 - PS417_01805 0.51 -0.8 403,458 - PS417_01805 0.51 -0.3 403,458 - PS417_01805 0.51 -1.1 403,458 - PS417_01805 0.51 +0.1 403,458 - PS417_01805 0.51 -0.2 403,460 - PS417_01805 0.51 -0.2 403,460 - PS417_01805 0.51 +0.0 403,460 - PS417_01805 0.51 +0.3 403,460 - PS417_01805 0.51 -0.2 403,550 + PS417_01805 0.62 -0.1 403,550 + PS417_01805 0.62 +0.6 403,551 - -4.1 403,551 - PS417_01805 0.63 +0.6 403,590 + PS417_01805 0.67 +0.8 403,591 - PS417_01805 0.68 +0.5 403,632 - PS417_01805 0.73 +0.4 403,632 - PS417_01805 0.73 -0.6 403,632 - PS417_01805 0.73 +0.1 403,638 + PS417_01805 0.73 +0.2 403,639 - PS417_01805 0.74 +2.1 403,677 - PS417_01805 0.78 +0.1 403,734 - PS417_01805 0.85 -1.3 403,790 + +0.1
Or see this region's nucleotide sequence