Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01430 and PS417_01435 overlap by 4 nucleotides PS417_01435 and PS417_01440 overlap by 11 nucleotides PS417_01440 and PS417_01445 are separated by 289 nucleotides PS417_01445 and PS417_01450 overlap by 4 nucleotides
PS417_01430: PS417_01430 - chromosome segregation protein SMC, at 317,402 to 319,762
_01430
PS417_01435: PS417_01435 - hypothetical protein, at 319,759 to 320,478
_01435
PS417_01440: PS417_01440 - hypothetical protein, at 320,468 to 321,907
_01440
PS417_01445: PS417_01445 - hypothetical protein, at 322,197 to 322,472
_01445
PS417_01450: PS417_01450 - integrase, at 322,469 to 323,449
_01450
Position (kb) 320
321
322 Strain fitness (log2 ratio) -1
0
1 at 319.475 kb on + strand, within PS417_01430 at 319.555 kb on + strand at 319.555 kb on + strand at 319.556 kb on - strand at 319.844 kb on + strand, within PS417_01435 at 320.902 kb on - strand, within PS417_01440 at 321.033 kb on + strand, within PS417_01440 at 321.503 kb on + strand, within PS417_01440 at 321.546 kb on - strand, within PS417_01440 at 321.687 kb on + strand, within PS417_01440 at 321.688 kb on - strand, within PS417_01440 at 321.737 kb on - strand, within PS417_01440 at 321.793 kb on - strand at 321.872 kb on - strand at 321.930 kb on - strand at 321.930 kb on - strand at 321.947 kb on - strand at 322.000 kb on + strand at 322.003 kb on + strand at 322.004 kb on - strand at 322.004 kb on - strand at 322.258 kb on + strand, within PS417_01445 at 322.258 kb on + strand, within PS417_01445 at 322.258 kb on + strand, within PS417_01445 at 322.258 kb on + strand, within PS417_01445 at 322.259 kb on - strand, within PS417_01445 at 322.259 kb on - strand, within PS417_01445 at 322.262 kb on - strand, within PS417_01445 at 322.264 kb on + strand, within PS417_01445 at 322.265 kb on - strand, within PS417_01445 at 322.265 kb on - strand, within PS417_01445 at 322.265 kb on - strand, within PS417_01445 at 322.344 kb on - strand, within PS417_01445 at 322.347 kb on + strand, within PS417_01445 at 322.347 kb on + strand, within PS417_01445 at 322.395 kb on + strand, within PS417_01445 at 322.395 kb on + strand, within PS417_01445 at 322.396 kb on - strand, within PS417_01445 at 322.396 kb on - strand, within PS417_01445 at 322.396 kb on - strand, within PS417_01445 at 322.396 kb on - strand, within PS417_01445 at 322.488 kb on + strand at 322.488 kb on + strand at 322.552 kb on + strand at 322.552 kb on + strand at 322.552 kb on + strand at 322.553 kb on - strand at 322.553 kb on - strand at 322.638 kb on + strand, within PS417_01450 at 322.639 kb on - strand, within PS417_01450 at 322.639 kb on - strand, within PS417_01450 at 322.639 kb on - strand, within PS417_01450 at 322.678 kb on + strand, within PS417_01450 at 322.760 kb on - strand, within PS417_01450 at 322.804 kb on + strand, within PS417_01450 at 322.805 kb on - strand, within PS417_01450 at 322.805 kb on - strand, within PS417_01450 at 322.805 kb on - strand, within PS417_01450 at 322.805 kb on - strand, within PS417_01450
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 319,475 + PS417_01430 0.88 +0.7 319,555 + +0.9 319,555 + +0.2 319,556 - +0.4 319,844 + PS417_01435 0.12 +0.1 320,902 - PS417_01440 0.30 +1.7 321,033 + PS417_01440 0.39 +0.3 321,503 + PS417_01440 0.72 +0.3 321,546 - PS417_01440 0.75 +0.9 321,687 + PS417_01440 0.85 +0.3 321,688 - PS417_01440 0.85 +0.3 321,737 - PS417_01440 0.88 +0.7 321,793 - -0.1 321,872 - +0.3 321,930 - +1.1 321,930 - +0.4 321,947 - +0.8 322,000 + -0.2 322,003 + +0.6 322,004 - +0.5 322,004 - +1.3 322,258 + PS417_01445 0.22 -0.8 322,258 + PS417_01445 0.22 +0.3 322,258 + PS417_01445 0.22 +0.5 322,258 + PS417_01445 0.22 +0.2 322,259 - PS417_01445 0.22 +0.4 322,259 - PS417_01445 0.22 +0.1 322,262 - PS417_01445 0.24 +0.1 322,264 + PS417_01445 0.24 -0.1 322,265 - PS417_01445 0.25 -0.0 322,265 - PS417_01445 0.25 +0.1 322,265 - PS417_01445 0.25 +0.5 322,344 - PS417_01445 0.53 +0.1 322,347 + PS417_01445 0.54 +0.3 322,347 + PS417_01445 0.54 -1.2 322,395 + PS417_01445 0.72 +1.7 322,395 + PS417_01445 0.72 +0.2 322,396 - PS417_01445 0.72 -0.2 322,396 - PS417_01445 0.72 -0.1 322,396 - PS417_01445 0.72 +0.5 322,396 - PS417_01445 0.72 -0.8 322,488 + -0.3 322,488 + +0.5 322,552 + -0.4 322,552 + -0.1 322,552 + -1.3 322,553 - +0.3 322,553 - -0.1 322,638 + PS417_01450 0.17 +0.3 322,639 - PS417_01450 0.17 +0.0 322,639 - PS417_01450 0.17 -0.5 322,639 - PS417_01450 0.17 +0.4 322,678 + PS417_01450 0.21 -0.7 322,760 - PS417_01450 0.30 -0.3 322,804 + PS417_01450 0.34 -0.4 322,805 - PS417_01450 0.34 +0.2 322,805 - PS417_01450 0.34 +0.2 322,805 - PS417_01450 0.34 +0.1 322,805 - PS417_01450 0.34 +0.3
Or see this region's nucleotide sequence