Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01210 and PS417_01215 are separated by 56 nucleotides PS417_01215 and PS417_01220 are separated by 28 nucleotides PS417_01220 and PS417_01230 are separated by 610 nucleotides PS417_01230 and PS417_01235 overlap by 28 nucleotides
PS417_01210: PS417_01210 - hypothetical protein, at 265,433 to 266,974
_01210
PS417_01215: PS417_01215 - membrane protein, at 267,031 to 267,882
_01215
PS417_01220: PS417_01220 - hypothetical protein, at 267,911 to 268,267
_01220
PS417_01230: PS417_01230 - hypothetical protein, at 268,878 to 269,123
_01230
PS417_01235: PS417_01235 - cell division protein Fic, at 269,096 to 269,695
_01235
Position (kb) 267
268
269 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 266.972 kb on + strand at 266.972 kb on + strand at 266.973 kb on - strand at 267.032 kb on + strand at 267.156 kb on + strand, within PS417_01215 at 267.156 kb on + strand, within PS417_01215 at 267.156 kb on + strand, within PS417_01215 at 267.157 kb on - strand, within PS417_01215 at 267.410 kb on + strand, within PS417_01215 at 267.591 kb on - strand, within PS417_01215 at 267.591 kb on - strand, within PS417_01215 at 267.795 kb on - strand, within PS417_01215 at 267.897 kb on - strand at 267.897 kb on - strand at 267.897 kb on - strand at 267.897 kb on - strand at 267.966 kb on + strand, within PS417_01220 at 267.967 kb on - strand, within PS417_01220 at 267.967 kb on - strand, within PS417_01220 at 268.054 kb on - strand, within PS417_01220 at 268.059 kb on + strand, within PS417_01220 at 268.059 kb on + strand, within PS417_01220 at 268.059 kb on + strand, within PS417_01220 at 268.060 kb on - strand, within PS417_01220 at 268.060 kb on - strand, within PS417_01220 at 268.060 kb on - strand, within PS417_01220 at 268.358 kb on + strand at 268.358 kb on + strand at 268.359 kb on - strand at 268.359 kb on - strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.401 kb on + strand at 268.401 kb on + strand at 268.401 kb on + strand at 268.401 kb on + strand at 268.402 kb on - strand at 268.402 kb on - strand at 268.402 kb on - strand at 268.406 kb on + strand at 268.406 kb on + strand at 268.409 kb on + strand at 268.409 kb on + strand at 268.409 kb on + strand at 268.423 kb on + strand at 268.500 kb on + strand at 268.501 kb on - strand at 268.501 kb on - strand at 268.501 kb on - strand at 268.504 kb on + strand at 268.504 kb on + strand at 268.598 kb on + strand at 268.598 kb on + strand at 268.599 kb on - strand at 268.599 kb on - strand at 268.599 kb on - strand at 268.648 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.653 kb on - strand at 268.820 kb on + strand at 268.820 kb on + strand at 269.011 kb on - strand, within PS417_01230 at 269.011 kb on - strand, within PS417_01230 at 269.014 kb on + strand, within PS417_01230 at 269.015 kb on - strand, within PS417_01230 at 269.015 kb on - strand, within PS417_01230 at 269.078 kb on + strand, within PS417_01230 at 269.119 kb on + strand at 269.120 kb on - strand at 269.173 kb on + strand, within PS417_01235 at 269.173 kb on + strand, within PS417_01235
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 266,972 + -0.8 266,972 + +1.0 266,973 - +0.2 267,032 + -1.0 267,156 + PS417_01215 0.15 -0.4 267,156 + PS417_01215 0.15 +0.1 267,156 + PS417_01215 0.15 -0.0 267,157 - PS417_01215 0.15 -0.3 267,410 + PS417_01215 0.44 +0.0 267,591 - PS417_01215 0.66 -0.3 267,591 - PS417_01215 0.66 -0.3 267,795 - PS417_01215 0.90 -0.1 267,897 - -0.0 267,897 - -0.9 267,897 - +0.2 267,897 - -0.9 267,966 + PS417_01220 0.15 -2.8 267,967 - PS417_01220 0.16 -1.1 267,967 - PS417_01220 0.16 -0.1 268,054 - PS417_01220 0.40 -1.2 268,059 + PS417_01220 0.41 -0.3 268,059 + PS417_01220 0.41 -0.7 268,059 + PS417_01220 0.41 +1.3 268,060 - PS417_01220 0.42 -0.0 268,060 - PS417_01220 0.42 -0.3 268,060 - PS417_01220 0.42 -0.0 268,358 + +0.5 268,358 + -0.1 268,359 - -0.3 268,359 - -0.3 268,397 + +0.3 268,397 + -1.8 268,397 + +0.9 268,397 + -0.1 268,397 + -0.1 268,401 + -0.6 268,401 + +0.5 268,401 + -0.8 268,401 + +1.3 268,402 - +1.1 268,402 - +0.8 268,402 - -0.0 268,406 + +0.2 268,406 + -1.4 268,409 + -0.3 268,409 + +0.1 268,409 + -0.5 268,423 + +1.4 268,500 + +0.3 268,501 - +0.0 268,501 - +0.6 268,501 - +0.7 268,504 + +0.1 268,504 + +0.8 268,598 + +0.3 268,598 + -0.0 268,599 - +0.4 268,599 - -0.3 268,599 - +0.2 268,648 + +0.3 268,652 + -0.3 268,652 + +0.1 268,652 + +0.7 268,652 + +0.1 268,652 + -0.3 268,653 - -0.9 268,820 + +0.2 268,820 + +0.3 269,011 - PS417_01230 0.54 -0.4 269,011 - PS417_01230 0.54 +0.1 269,014 + PS417_01230 0.55 +0.5 269,015 - PS417_01230 0.56 -1.0 269,015 - PS417_01230 0.56 -1.5 269,078 + PS417_01230 0.81 -0.1 269,119 + +0.8 269,120 - -0.2 269,173 + PS417_01235 0.13 -1.8 269,173 + PS417_01235 0.13 -0.6
Or see this region's nucleotide sequence