Strain Fitness in Pseudomonas simiae WCS417 around PS417_01120

Experiment: Vogels_fungal_media; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01115 and PS417_01120 are separated by 270 nucleotidesPS417_01120 and PS417_01125 are separated by 179 nucleotides PS417_01115: PS417_01115 - serine acetyltransferase, at 243,852 to 244,778 _01115 PS417_01120: PS417_01120 - choline transporter, at 245,049 to 247,049 _01120 PS417_01125: PS417_01125 - cysteine desulfhydrase, at 247,229 to 248,557 _01125 Position (kb) 245 246 247 248Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 244.075 kb on - strand, within PS417_01115at 244.531 kb on - strand, within PS417_01115at 244.635 kb on + strand, within PS417_01115at 244.734 kb on - strandat 244.855 kb on + strandat 244.870 kb on + strandat 244.870 kb on + strandat 244.871 kb on - strandat 244.875 kb on + strandat 244.875 kb on + strandat 244.876 kb on - strandat 244.876 kb on - strandat 244.883 kb on - strandat 244.886 kb on + strandat 244.924 kb on + strandat 244.925 kb on - strandat 244.991 kb on + strandat 244.992 kb on - strandat 244.992 kb on - strandat 245.013 kb on + strandat 245.014 kb on - strandat 245.139 kb on - strandat 245.141 kb on + strandat 245.142 kb on - strandat 245.223 kb on + strandat 245.223 kb on + strandat 245.223 kb on + strandat 245.223 kb on + strandat 245.224 kb on - strandat 245.244 kb on + strandat 245.291 kb on - strand, within PS417_01120at 245.291 kb on - strand, within PS417_01120at 245.328 kb on + strand, within PS417_01120at 245.655 kb on - strand, within PS417_01120at 245.718 kb on + strand, within PS417_01120at 245.719 kb on - strand, within PS417_01120at 245.719 kb on - strand, within PS417_01120at 245.977 kb on - strand, within PS417_01120at 246.087 kb on - strand, within PS417_01120at 246.087 kb on - strand, within PS417_01120at 246.244 kb on - strand, within PS417_01120at 246.262 kb on - strand, within PS417_01120at 246.353 kb on + strand, within PS417_01120at 246.353 kb on + strand, within PS417_01120at 246.354 kb on - strand, within PS417_01120at 246.354 kb on - strand, within PS417_01120at 246.354 kb on - strand, within PS417_01120at 246.354 kb on - strand, within PS417_01120at 246.354 kb on - strand, within PS417_01120at 246.556 kb on - strand, within PS417_01120at 246.684 kb on + strand, within PS417_01120at 246.855 kb on + strandat 246.957 kb on + strandat 246.957 kb on + strandat 246.958 kb on - strandat 246.972 kb on + strandat 247.012 kb on - strandat 247.151 kb on + strandat 247.151 kb on + strandat 247.255 kb on + strandat 247.255 kb on + strandat 247.256 kb on - strandat 247.279 kb on + strandat 247.418 kb on + strand, within PS417_01125at 247.463 kb on + strand, within PS417_01125at 247.464 kb on - strand, within PS417_01125at 247.635 kb on - strand, within PS417_01125at 247.748 kb on - strand, within PS417_01125at 247.748 kb on - strand, within PS417_01125at 247.883 kb on + strand, within PS417_01125at 247.884 kb on - strand, within PS417_01125at 247.884 kb on - strand, within PS417_01125at 247.884 kb on - strand, within PS417_01125at 247.902 kb on - strand, within PS417_01125at 247.902 kb on - strand, within PS417_01125at 247.904 kb on + strand, within PS417_01125

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5
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244,075 - PS417_01115 0.24 -0.1
244,531 - PS417_01115 0.73 -0.7
244,635 + PS417_01115 0.84 -3.2
244,734 - -0.7
244,855 + -1.9
244,870 + +0.5
244,870 + -0.5
244,871 - +0.5
244,875 + -0.8
244,875 + -0.3
244,876 - +0.2
244,876 - -0.8
244,883 - -0.1
244,886 + -0.7
244,924 + +0.2
244,925 - +0.4
244,991 + -0.2
244,992 - +0.1
244,992 - -0.5
245,013 + +0.0
245,014 - -0.5
245,139 - -0.3
245,141 + +0.0
245,142 - -0.5
245,223 + +0.4
245,223 + +0.6
245,223 + -0.5
245,223 + +0.7
245,224 - -1.5
245,244 + +0.2
245,291 - PS417_01120 0.12 +1.4
245,291 - PS417_01120 0.12 +0.4
245,328 + PS417_01120 0.14 -0.0
245,655 - PS417_01120 0.30 +0.4
245,718 + PS417_01120 0.33 -0.5
245,719 - PS417_01120 0.33 +0.7
245,719 - PS417_01120 0.33 -0.7
245,977 - PS417_01120 0.46 +0.3
246,087 - PS417_01120 0.52 +1.9
246,087 - PS417_01120 0.52 -1.2
246,244 - PS417_01120 0.60 -0.1
246,262 - PS417_01120 0.61 +0.4
246,353 + PS417_01120 0.65 -0.7
246,353 + PS417_01120 0.65 +0.6
246,354 - PS417_01120 0.65 -0.6
246,354 - PS417_01120 0.65 -0.1
246,354 - PS417_01120 0.65 +0.2
246,354 - PS417_01120 0.65 -1.4
246,354 - PS417_01120 0.65 -0.3
246,556 - PS417_01120 0.75 -0.2
246,684 + PS417_01120 0.82 -0.0
246,855 + -1.0
246,957 + +0.2
246,957 + -0.7
246,958 - +0.1
246,972 + -0.7
247,012 - -0.7
247,151 + +0.3
247,151 + +0.5
247,255 + +0.7
247,255 + -0.2
247,256 - +0.4
247,279 + -0.0
247,418 + PS417_01125 0.14 -0.7
247,463 + PS417_01125 0.18 +0.6
247,464 - PS417_01125 0.18 +0.5
247,635 - PS417_01125 0.31 -0.4
247,748 - PS417_01125 0.39 +0.8
247,748 - PS417_01125 0.39 +0.3
247,883 + PS417_01125 0.49 +0.1
247,884 - PS417_01125 0.49 +0.0
247,884 - PS417_01125 0.49 -0.1
247,884 - PS417_01125 0.49 +0.5
247,902 - PS417_01125 0.51 -0.8
247,902 - PS417_01125 0.51 -0.1
247,904 + PS417_01125 0.51 +0.8

Or see this region's nucleotide sequence