Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01110 and PS417_01115 are separated by 165 nucleotides PS417_01115 and PS417_01120 are separated by 270 nucleotides
PS417_01110: PS417_01110 - cysteine desulfhydrase, at 242,694 to 243,686
_01110
PS417_01115: PS417_01115 - serine acetyltransferase, at 243,852 to 244,778
_01115
PS417_01120: PS417_01120 - choline transporter, at 245,049 to 247,049
_01120
Position (kb) 243
244
245 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 242.911 kb on + strand, within PS417_01110 at 242.911 kb on + strand, within PS417_01110 at 243.178 kb on - strand, within PS417_01110 at 243.181 kb on + strand, within PS417_01110 at 243.182 kb on - strand, within PS417_01110 at 243.227 kb on - strand, within PS417_01110 at 243.358 kb on + strand, within PS417_01110 at 243.358 kb on + strand, within PS417_01110 at 243.474 kb on + strand, within PS417_01110 at 243.517 kb on + strand, within PS417_01110 at 243.518 kb on - strand, within PS417_01110 at 243.580 kb on + strand, within PS417_01110 at 243.580 kb on + strand, within PS417_01110 at 243.580 kb on + strand, within PS417_01110 at 243.581 kb on - strand, within PS417_01110 at 243.581 kb on - strand, within PS417_01110 at 243.691 kb on - strand at 243.704 kb on - strand at 243.704 kb on - strand at 243.707 kb on + strand at 243.708 kb on - strand at 243.708 kb on - strand at 243.720 kb on + strand at 243.721 kb on - strand at 243.818 kb on + strand at 243.819 kb on - strand at 243.849 kb on - strand at 243.881 kb on - strand at 244.075 kb on - strand, within PS417_01115 at 244.531 kb on - strand, within PS417_01115 at 244.635 kb on + strand, within PS417_01115 at 244.734 kb on - strand at 244.855 kb on + strand at 244.870 kb on + strand at 244.870 kb on + strand at 244.871 kb on - strand at 244.875 kb on + strand at 244.875 kb on + strand at 244.876 kb on - strand at 244.876 kb on - strand at 244.883 kb on - strand at 244.886 kb on + strand at 244.924 kb on + strand at 244.925 kb on - strand at 244.991 kb on + strand at 244.992 kb on - strand at 244.992 kb on - strand at 245.013 kb on + strand at 245.014 kb on - strand at 245.139 kb on - strand at 245.141 kb on + strand at 245.142 kb on - strand at 245.223 kb on + strand at 245.223 kb on + strand at 245.223 kb on + strand at 245.223 kb on + strand at 245.224 kb on - strand at 245.244 kb on + strand at 245.291 kb on - strand, within PS417_01120 at 245.291 kb on - strand, within PS417_01120 at 245.328 kb on + strand, within PS417_01120 at 245.655 kb on - strand, within PS417_01120 at 245.718 kb on + strand, within PS417_01120 at 245.719 kb on - strand, within PS417_01120 at 245.719 kb on - strand, within PS417_01120
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 242,911 + PS417_01110 0.22 -0.1 242,911 + PS417_01110 0.22 +0.0 243,178 - PS417_01110 0.49 +0.6 243,181 + PS417_01110 0.49 -0.5 243,182 - PS417_01110 0.49 -0.1 243,227 - PS417_01110 0.54 -1.9 243,358 + PS417_01110 0.67 -0.4 243,358 + PS417_01110 0.67 -0.2 243,474 + PS417_01110 0.79 +2.3 243,517 + PS417_01110 0.83 +0.1 243,518 - PS417_01110 0.83 -1.1 243,580 + PS417_01110 0.89 -2.2 243,580 + PS417_01110 0.89 +0.1 243,580 + PS417_01110 0.89 -0.6 243,581 - PS417_01110 0.89 -0.2 243,581 - PS417_01110 0.89 -0.8 243,691 - -0.2 243,704 - +0.7 243,704 - -0.4 243,707 + +0.4 243,708 - -0.1 243,708 - -1.2 243,720 + -0.4 243,721 - +0.1 243,818 + -0.9 243,819 - +0.3 243,849 - +0.5 243,881 - -0.2 244,075 - PS417_01115 0.24 -0.1 244,531 - PS417_01115 0.73 -0.7 244,635 + PS417_01115 0.84 -3.2 244,734 - -0.7 244,855 + -1.9 244,870 + +0.5 244,870 + -0.5 244,871 - +0.5 244,875 + -0.8 244,875 + -0.3 244,876 - +0.2 244,876 - -0.8 244,883 - -0.1 244,886 + -0.7 244,924 + +0.2 244,925 - +0.4 244,991 + -0.2 244,992 - +0.1 244,992 - -0.5 245,013 + +0.0 245,014 - -0.5 245,139 - -0.3 245,141 + +0.0 245,142 - -0.5 245,223 + +0.4 245,223 + +0.6 245,223 + -0.5 245,223 + +0.7 245,224 - -1.5 245,244 + +0.2 245,291 - PS417_01120 0.12 +1.4 245,291 - PS417_01120 0.12 +0.4 245,328 + PS417_01120 0.14 -0.0 245,655 - PS417_01120 0.30 +0.4 245,718 + PS417_01120 0.33 -0.5 245,719 - PS417_01120 0.33 +0.7 245,719 - PS417_01120 0.33 -0.7
Or see this region's nucleotide sequence