Experiment: Vogels_fungal_media; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00920 and PS417_00925 are separated by 211 nucleotides PS417_00925 and PS417_00930 are separated by 73 nucleotides PS417_00930 and PS417_00935 are separated by 158 nucleotides PS417_00935 and PS417_00940 are separated by 13 nucleotides
PS417_00920: PS417_00920 - diguanylate cyclase, at 206,023 to 207,936
_00920
PS417_00925: PS417_00925 - hypothetical protein, at 208,148 to 208,330
_00925
PS417_00930: PS417_00930 - ABC transporter permease, at 208,404 to 209,414
_00930
PS417_00935: PS417_00935 - sulfate ABC transporter permease, at 209,573 to 210,391
_00935
PS417_00940: PS417_00940 - sulfate ABC transporter permease, at 210,405 to 211,277
_00940
Position (kb) 208
209
210 Strain fitness (log2 ratio) -2
-1
0
1
2 at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.081 kb on + strand at 208.082 kb on - strand at 208.082 kb on - strand at 208.127 kb on - strand at 208.135 kb on - strand at 208.135 kb on - strand at 208.135 kb on - strand at 208.162 kb on - strand at 208.162 kb on - strand at 208.165 kb on + strand at 208.258 kb on + strand, within PS417_00925 at 208.272 kb on + strand, within PS417_00925 at 208.329 kb on - strand at 208.353 kb on + strand at 208.354 kb on - strand at 208.365 kb on + strand at 208.366 kb on - strand at 208.366 kb on - strand at 208.366 kb on - strand at 208.367 kb on + strand at 208.367 kb on + strand at 208.403 kb on + strand at 208.403 kb on + strand at 208.404 kb on - strand at 208.404 kb on - strand at 208.404 kb on - strand at 208.404 kb on - strand at 208.479 kb on + strand at 208.530 kb on + strand, within PS417_00930 at 208.530 kb on + strand, within PS417_00930 at 208.796 kb on + strand, within PS417_00930 at 208.797 kb on - strand, within PS417_00930 at 208.947 kb on + strand, within PS417_00930 at 208.948 kb on - strand, within PS417_00930 at 209.096 kb on + strand, within PS417_00930 at 209.202 kb on + strand, within PS417_00930 at 209.202 kb on + strand, within PS417_00930 at 209.203 kb on - strand, within PS417_00930 at 209.218 kb on - strand, within PS417_00930 at 209.218 kb on - strand, within PS417_00930 at 209.256 kb on + strand, within PS417_00930 at 209.490 kb on + strand at 209.491 kb on - strand at 209.572 kb on + strand at 209.572 kb on + strand at 209.573 kb on - strand at 209.624 kb on + strand at 209.636 kb on + strand at 209.652 kb on + strand at 209.679 kb on + strand, within PS417_00935 at 209.925 kb on - strand, within PS417_00935 at 209.981 kb on + strand, within PS417_00935 at 209.983 kb on + strand, within PS417_00935 at 210.203 kb on + strand, within PS417_00935 at 210.287 kb on + strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media; pH 5.5 remove 208,081 + +0.8 208,081 + +0.1 208,081 + -0.4 208,081 + -0.9 208,081 + +0.6 208,081 + -0.6 208,081 + +1.2 208,082 - +0.6 208,082 - +0.6 208,127 - +2.0 208,135 - +0.4 208,135 - -1.1 208,135 - -0.4 208,162 - -0.2 208,162 - +0.1 208,165 + -0.4 208,258 + PS417_00925 0.60 -0.4 208,272 + PS417_00925 0.68 -0.9 208,329 - -0.8 208,353 + +0.1 208,354 - +1.5 208,365 + -1.8 208,366 - -0.2 208,366 - -0.8 208,366 - +1.0 208,367 + -0.3 208,367 + -1.0 208,403 + -1.2 208,403 + -0.2 208,404 - -0.0 208,404 - -0.7 208,404 - -0.4 208,404 - +0.9 208,479 + -0.1 208,530 + PS417_00930 0.12 +0.8 208,530 + PS417_00930 0.12 +0.7 208,796 + PS417_00930 0.39 +1.9 208,797 - PS417_00930 0.39 +0.2 208,947 + PS417_00930 0.54 +0.2 208,948 - PS417_00930 0.54 -0.6 209,096 + PS417_00930 0.68 +0.3 209,202 + PS417_00930 0.79 +0.1 209,202 + PS417_00930 0.79 -1.0 209,203 - PS417_00930 0.79 +0.8 209,218 - PS417_00930 0.81 +0.4 209,218 - PS417_00930 0.81 +1.1 209,256 + PS417_00930 0.84 +2.3 209,490 + +0.2 209,491 - +0.5 209,572 + +0.1 209,572 + +0.2 209,573 - -0.0 209,624 + -0.2 209,636 + -1.3 209,652 + -0.1 209,679 + PS417_00935 0.13 +0.1 209,925 - PS417_00935 0.43 +0.2 209,981 + PS417_00935 0.50 -0.6 209,983 + PS417_00935 0.50 -0.1 210,203 + PS417_00935 0.77 +0.3 210,287 + PS417_00935 0.87 +0.2 210,288 - PS417_00935 0.87 -0.2 210,288 - PS417_00935 0.87 +0.5 210,288 - PS417_00935 0.87 +0.3
Or see this region's nucleotide sequence