Strain Fitness in Pseudomonas simiae WCS417 around PS417_08945

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,945,775	+		PS417_08935	0.22	-0.9
1,945,775	+		PS417_08935	0.22	-0.3
1,945,792	-		PS417_08935	0.25	+0.6
1,945,892	-		PS417_08935	0.46	-0.3
1,945,892	-		PS417_08935	0.46	-0.2
1,945,938	+		PS417_08935	0.56	-0.0
1,945,938	+		PS417_08935	0.56	-0.3
1,945,938	+		PS417_08935	0.56	+0.6
1,945,939	-				-0.2
1,946,031	+		PS417_08935	0.75	+0.4
1,946,078	+		PS417_08935	0.85	-0.8
1,946,078	+		PS417_08935	0.85	+0.0
1,946,079	-		PS417_08935	0.86	-0.2
1,946,079	-		PS417_08935	0.86	-0.6
1,946,196	-		PS417_08940	0.11	-0.0
1,946,299	+		PS417_08940	0.34	-0.3
1,946,299	+		PS417_08940	0.34	+0.4
1,946,300	-		PS417_08940	0.34	-0.6
1,946,300	-		PS417_08940	0.34	+1.7
1,946,300	-		PS417_08940	0.34	+0.3
1,946,463	-				+1.6
1,946,768	-				-2.2
1,946,831	+				-1.3
1,947,105	-		PS417_08945	0.22	-0.8
1,947,234	+		PS417_08945	0.29	-1.6
1,947,235	-		PS417_08945	0.29	-1.3
1,947,235	-		PS417_08945	0.29	-2.1
1,947,276	+		PS417_08945	0.31	-1.0
1,947,292	+		PS417_08945	0.32	-0.7
1,947,293	-		PS417_08945	0.32	-1.4
1,947,439	+		PS417_08945	0.40	-0.9
1,947,451	+		PS417_08945	0.40	-0.5
1,947,524	-		PS417_08945	0.44	-0.3
1,947,538	+		PS417_08945	0.45	+0.4
1,947,744	+		PS417_08945	0.56	-0.3
1,947,744	+		PS417_08945	0.56	-1.3
1,947,744	+		PS417_08945	0.56	-1.1
1,947,744	+		PS417_08945	0.56	-0.1
1,947,958	+		PS417_08945	0.67	-2.6
1,947,994	+		PS417_08945	0.69	-1.3
1,947,995	-		PS417_08945	0.69	+0.2
1,947,995	-		PS417_08945	0.69	-0.4
1,947,995	-		PS417_08945	0.69	-0.2
1,947,995	-		PS417_08945	0.69	-0.7
1,947,997	+		PS417_08945	0.69	-1.2
1,948,093	-		PS417_08945	0.74	+0.0
1,948,114	+		PS417_08945	0.75	-0.2
1,948,114	+		PS417_08945	0.75	-0.3
1,948,115	-		PS417_08945	0.75	-0.4
1,948,546	+				+1.2
1,948,547	-				-0.5
1,948,547	-				-1.5
1,948,669	-				-0.5
1,948,688	-				+0.2
1,948,709	+				+2.6
1,948,709	+				-1.0
1,948,709	+				-0.6
1,948,709	+				-1.4
1,948,744	+				-1.0
1,948,874	+		PS417_08950	0.25	+0.1
1,948,874	+		PS417_08950	0.25	-0.8
1,948,875	-		PS417_08950	0.25	-0.6
1,948,875	-		PS417_08950	0.25	-1.1
1,948,878	-		PS417_08950	0.25	+1.7
1,948,878	-		PS417_08950	0.25	+0.2
1,949,350	+				+0.6
1,949,351	-				-0.5
1,949,351	-				-1.1
1,949,391	+				-0.8
1,949,391	+				+0.5
1,949,391	+				-2.1
1,949,427	+				+1.0
1,949,492	-				+0.2