Strain Fitness in Pseudomonas simiae WCS417 around PS417_06915

Experiment: Vogels_fungal_media; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vogels_fungal_media; pH 5.5
1,529,580	-				-4.3
1,529,612	+		PS417_06910	0.39	-0.8
1,529,612	+				-0.6
1,529,747	+		PS417_06910	0.50	+0.0
1,529,747	+		PS417_06910	0.50	+0.7
1,529,747	+		PS417_06910	0.50	-0.1
1,529,748	-		PS417_06910	0.50	+0.5
1,529,748	-		PS417_06910	0.50	+0.5
1,529,748	-		PS417_06910	0.50	-1.1
1,529,748	-		PS417_06910	0.50	+0.5
1,529,976	+		PS417_06910	0.70	+0.1
1,529,977	-		PS417_06910	0.70	-1.2
1,529,990	-		PS417_06910	0.71	+1.4
1,530,098	+		PS417_06910	0.80	+0.1
1,530,098	+		PS417_06910	0.80	+0.9
1,530,098	+		PS417_06910	0.80	+0.6
1,530,099	-		PS417_06910	0.80	+0.1
1,530,192	-		PS417_06910	0.88	+2.3
1,530,192	-		PS417_06910	0.88	+0.3
1,530,267	-				-0.1
1,530,310	+				-0.2
1,530,391	-				-0.5
1,530,408	+				-0.1
1,530,464	+				-0.4
1,530,710	+		PS417_06915	0.34	+0.4
1,530,711	-		PS417_06915	0.34	-1.3
1,530,711	-		PS417_06915	0.34	+0.1
1,530,737	+		PS417_06915	0.37	+0.2
1,530,739	+		PS417_06915	0.37	-0.2
1,530,739	+		PS417_06915	0.37	+0.8
1,530,739	+		PS417_06915	0.37	+0.2
1,530,740	-		PS417_06915	0.37	+0.4
1,530,744	-		PS417_06915	0.38	+0.0
1,530,744	-		PS417_06915	0.38	+1.0
1,531,014	+		PS417_06915	0.72	-0.6
1,531,084	-		PS417_06915	0.80	+0.4
1,531,097	+		PS417_06915	0.82	+0.9
1,531,101	+		PS417_06915	0.83	+0.5
1,531,101	+		PS417_06915	0.83	-1.2
1,531,102	-		PS417_06915	0.83	-0.6
1,531,102	-		PS417_06915	0.83	-0.1
1,531,124	-		PS417_06915	0.85	-0.2
1,531,128	-		PS417_06915	0.86	+0.3
1,531,201	+				-0.2
1,531,201	+				-0.3
1,531,202	-				-0.6
1,531,202	-				+0.5
1,531,281	-				+0.0
1,531,325	+				+0.6
1,531,344	-				-0.2
1,531,353	-				+0.3
1,531,470	+				+0.2
1,531,815	+				-1.7
1,531,819	+				+0.7
1,531,861	+				+0.2
1,531,906	-				+0.2
1,531,907	+				-0.2
1,531,907	+				-0.1
1,531,907	+				+1.6
1,531,908	-				+0.2
1,531,915	-				+0.1
1,531,973	-				+0.2
1,531,998	+				-1.1
1,532,001	+				-1.1
1,532,001	+				+0.3
1,532,002	-				-0.1
1,532,014	+				+0.2
1,532,014	+				+0.3
1,532,015	-				+0.6
1,532,015	-				+0.9
1,532,053	+				-1.4
1,532,129	+		PS417_06920	0.19	+1.7
1,532,130	-		PS417_06920	0.19	-0.3