Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27635 and PS417_27640 overlap by 4 nucleotides PS417_27640 and PS417_27645 are separated by 111 nucleotides
PS417_27635: PS417_27635 - magnesium chelatase, at 5,958,467 to 5,959,963
_27635
PS417_27640: PS417_27640 - TetR family transcriptional regulator, at 5,959,960 to 5,960,544
_27640
PS417_27645: PS417_27645 - membrane protein, at 5,960,656 to 5,961,570
_27645
Position (kb) 5959
5960
5961 Strain fitness (log2 ratio) -1
0
1
2 at 5959.013 kb on + strand, within PS417_27635 at 5959.014 kb on - strand, within PS417_27635 at 5959.048 kb on - strand, within PS417_27635 at 5959.395 kb on + strand, within PS417_27635 at 5959.396 kb on - strand, within PS417_27635 at 5960.418 kb on - strand, within PS417_27640 at 5960.570 kb on + strand at 5960.635 kb on + strand at 5960.635 kb on + strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.636 kb on - strand at 5960.749 kb on + strand, within PS417_27645 at 5960.879 kb on - strand, within PS417_27645 at 5960.879 kb on - strand, within PS417_27645 at 5960.957 kb on - strand, within PS417_27645 at 5961.301 kb on + strand, within PS417_27645 at 5961.355 kb on + strand, within PS417_27645 at 5961.445 kb on + strand, within PS417_27645 at 5961.445 kb on + strand, within PS417_27645 at 5961.446 kb on - strand, within PS417_27645 at 5961.446 kb on - strand, within PS417_27645 at 5961.460 kb on + strand, within PS417_27645 at 5961.460 kb on + strand, within PS417_27645 at 5961.461 kb on - strand, within PS417_27645
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 5,959,013 + PS417_27635 0.36 -0.4 5,959,014 - PS417_27635 0.37 +1.1 5,959,048 - PS417_27635 0.39 -0.0 5,959,395 + PS417_27635 0.62 -0.2 5,959,396 - PS417_27635 0.62 -0.2 5,960,418 - PS417_27640 0.78 -1.5 5,960,570 + -0.4 5,960,635 + -1.1 5,960,635 + -0.4 5,960,636 - -0.8 5,960,636 - +0.1 5,960,636 - +0.0 5,960,636 - +0.3 5,960,749 + PS417_27645 0.10 +0.7 5,960,879 - PS417_27645 0.24 +1.6 5,960,879 - PS417_27645 0.24 +0.3 5,960,957 - PS417_27645 0.33 +2.1 5,961,301 + PS417_27645 0.70 -0.3 5,961,355 + PS417_27645 0.76 -0.1 5,961,445 + PS417_27645 0.86 +0.2 5,961,445 + PS417_27645 0.86 -0.9 5,961,446 - PS417_27645 0.86 +0.3 5,961,446 - PS417_27645 0.86 -0.5 5,961,460 + PS417_27645 0.88 +0.3 5,961,460 + PS417_27645 0.88 +0.6 5,961,461 - PS417_27645 0.88 +0.7
Or see this region's nucleotide sequence