Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23545 and PS417_23550 are separated by 109 nucleotides PS417_23550 and PS417_23555 are separated by 192 nucleotides PS417_23555 and PS417_23560 are separated by 34 nucleotides
PS417_23545: PS417_23545 - gamma-glutamyl kinase, at 5,093,255 to 5,094,373
_23545
PS417_23550: PS417_23550 - GTPase CgtA, at 5,094,483 to 5,095,706
_23550
PS417_23555: PS417_23555 - 50S ribosomal protein L27, at 5,095,899 to 5,096,156
_23555
PS417_23560: PS417_23560 - 50S ribosomal protein L21, at 5,096,191 to 5,096,505
_23560
Position (kb) 5094
5095
5096 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5094.335 kb on + strand at 5094.386 kb on + strand at 5094.387 kb on - strand at 5094.387 kb on - strand at 5094.387 kb on - strand at 5094.496 kb on + strand at 5095.754 kb on - strand at 5095.754 kb on - strand at 5095.820 kb on - strand at 5095.820 kb on - strand at 5096.554 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 5,094,335 + -2.3 5,094,386 + -3.6 5,094,387 - -3.5 5,094,387 - +0.0 5,094,387 - -0.1 5,094,496 + -2.1 5,095,754 - -1.1 5,095,754 - +0.2 5,095,820 - -0.5 5,095,820 - -0.5 5,096,554 - -1.0
Or see this region's nucleotide sequence