Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02045 and PS417_02050 overlap by 4 nucleotides PS417_02050 and PS417_02055 overlap by 4 nucleotides PS417_02055 and PS417_02060 overlap by 4 nucleotides
PS417_02045: PS417_02045 - 3-oxoacyl-ACP synthase, at 458,809 to 459,975
_02045
PS417_02050: PS417_02050 - hypothetical protein, at 459,972 to 460,454
_02050
PS417_02055: PS417_02055 - methyltransferase, at 460,451 to 461,185
_02055
PS417_02060: PS417_02060 - FAD-dependent oxidoreductase, at 461,182 to 462,429
_02060
Position (kb) 460
461
462 Strain fitness (log2 ratio) -2
-1
0
1 at 459.599 kb on + strand, within PS417_02045 at 459.707 kb on + strand, within PS417_02045 at 459.708 kb on - strand, within PS417_02045 at 460.716 kb on + strand, within PS417_02055 at 460.716 kb on + strand, within PS417_02055 at 460.717 kb on - strand, within PS417_02055 at 460.717 kb on - strand, within PS417_02055 at 460.746 kb on + strand, within PS417_02055 at 460.747 kb on - strand, within PS417_02055 at 461.059 kb on + strand, within PS417_02055 at 461.068 kb on + strand, within PS417_02055 at 461.459 kb on - strand, within PS417_02060 at 461.814 kb on + strand, within PS417_02060 at 461.815 kb on - strand, within PS417_02060 at 461.992 kb on + strand, within PS417_02060
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 459,599 + PS417_02045 0.68 -1.8 459,707 + PS417_02045 0.77 -0.2 459,708 - PS417_02045 0.77 -0.2 460,716 + PS417_02055 0.36 +0.8 460,716 + PS417_02055 0.36 -1.1 460,717 - PS417_02055 0.36 -1.6 460,717 - PS417_02055 0.36 -0.8 460,746 + PS417_02055 0.40 -0.9 460,747 - PS417_02055 0.40 -0.4 461,059 + PS417_02055 0.83 -0.4 461,068 + PS417_02055 0.84 -0.3 461,459 - PS417_02060 0.22 +0.1 461,814 + PS417_02060 0.51 -1.1 461,815 - PS417_02060 0.51 +0.3 461,992 + PS417_02060 0.65 +0.1
Or see this region's nucleotide sequence