Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03255 and PS417_03260 are separated by 139 nucleotides PS417_03260 and PS417_03265 are separated by 158 nucleotides PS417_03265 and PS417_03270 overlap by 14 nucleotides
PS417_03255: PS417_03255 - 23S ribosomal RNA, at 744,427 to 747,342
_03255
PS417_03260: PS417_03260 - 5S ribosomal RNA, at 747,482 to 747,597
_03260
PS417_03265: PS417_03265 - paraquat-inducible protein A, at 747,756 to 748,415
_03265
PS417_03270: PS417_03270 - paraquat-inducible protein A, at 748,402 to 749,025
_03270
Position (kb) 747
748 Strain fitness (log2 ratio) -2
-1
0
1
2 at 747.582 kb on + strand, within PS417_03260 at 747.582 kb on + strand, within PS417_03260 at 747.694 kb on + strand at 747.694 kb on + strand at 747.713 kb on + strand at 747.713 kb on + strand at 747.714 kb on - strand at 747.714 kb on - strand at 747.714 kb on - strand at 747.714 kb on - strand at 747.719 kb on - strand at 747.751 kb on + strand at 747.755 kb on + strand at 747.755 kb on + strand at 747.755 kb on + strand at 747.755 kb on + strand at 747.756 kb on - strand at 747.756 kb on - strand at 747.756 kb on - strand at 747.898 kb on + strand, within PS417_03265 at 747.899 kb on - strand, within PS417_03265 at 747.899 kb on - strand, within PS417_03265 at 747.899 kb on - strand, within PS417_03265 at 747.901 kb on - strand, within PS417_03265 at 747.963 kb on + strand, within PS417_03265 at 747.964 kb on - strand, within PS417_03265 at 748.003 kb on + strand, within PS417_03265 at 748.004 kb on - strand, within PS417_03265 at 748.004 kb on - strand, within PS417_03265 at 748.087 kb on + strand, within PS417_03265 at 748.176 kb on + strand, within PS417_03265 at 748.177 kb on - strand, within PS417_03265 at 748.200 kb on + strand, within PS417_03265 at 748.201 kb on - strand, within PS417_03265 at 748.201 kb on - strand, within PS417_03265 at 748.324 kb on + strand, within PS417_03265
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 747,582 + PS417_03260 0.86 +0.5 747,582 + PS417_03260 0.86 -2.3 747,694 + +0.4 747,694 + +0.3 747,713 + +1.0 747,713 + +0.9 747,714 - +0.4 747,714 - -0.1 747,714 - -0.6 747,714 - +0.3 747,719 - +0.7 747,751 + -1.1 747,755 + +0.1 747,755 + +0.1 747,755 + -0.0 747,755 + -0.9 747,756 - -0.1 747,756 - -0.2 747,756 - -0.3 747,898 + PS417_03265 0.22 -0.1 747,899 - PS417_03265 0.22 -0.6 747,899 - PS417_03265 0.22 +0.5 747,899 - PS417_03265 0.22 -0.4 747,901 - PS417_03265 0.22 -2.5 747,963 + PS417_03265 0.31 +0.4 747,964 - PS417_03265 0.32 -0.1 748,003 + PS417_03265 0.37 -1.5 748,004 - PS417_03265 0.38 -1.8 748,004 - PS417_03265 0.38 -0.7 748,087 + PS417_03265 0.50 +2.0 748,176 + PS417_03265 0.64 -1.0 748,177 - PS417_03265 0.64 +0.1 748,200 + PS417_03265 0.67 -0.5 748,201 - PS417_03265 0.67 -2.1 748,201 - PS417_03265 0.67 -1.3 748,324 + PS417_03265 0.86 +0.4
Or see this region's nucleotide sequence