Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02785 and PS417_02790 are separated by 113 nucleotides PS417_02790 and PS417_02795 overlap by 4 nucleotides PS417_02795 and PS417_02800 are separated by 5 nucleotides PS417_02800 and PS417_02805 are separated by 9 nucleotides PS417_02805 and PS417_02810 are separated by 161 nucleotides
PS417_02785: PS417_02785 - Urease (EC 3.5.1.5) <small>(from data)</small>, at 633,273 to 634,973
_02785
PS417_02790: PS417_02790 - urease subunit beta, at 635,087 to 635,392
_02790
PS417_02795: PS417_02795 - acetyltransferase, at 635,389 to 635,922
_02795
PS417_02800: PS417_02800 - acetyltransferase, at 635,928 to 636,440
_02800
PS417_02805: PS417_02805 - urease subunit gamma, at 636,450 to 636,752
_02805
PS417_02810: PS417_02810 - urease accessory protein UreD, at 636,914 to 637,753
_02810
Position (kb) 635
636
637 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 634.939 kb on + strand at 634.939 kb on + strand at 634.940 kb on - strand at 634.940 kb on - strand at 634.940 kb on - strand at 634.951 kb on + strand at 634.951 kb on + strand at 635.050 kb on + strand at 635.053 kb on + strand at 635.053 kb on + strand at 635.054 kb on - strand at 635.057 kb on + strand at 635.057 kb on + strand at 635.088 kb on + strand at 635.333 kb on - strand, within PS417_02790 at 635.377 kb on - strand at 635.417 kb on + strand at 635.418 kb on - strand at 635.485 kb on - strand, within PS417_02795 at 635.486 kb on + strand, within PS417_02795 at 635.486 kb on + strand, within PS417_02795 at 635.487 kb on - strand, within PS417_02795 at 635.501 kb on + strand, within PS417_02795 at 635.502 kb on - strand, within PS417_02795 at 635.540 kb on + strand, within PS417_02795 at 635.629 kb on + strand, within PS417_02795 at 635.629 kb on + strand, within PS417_02795 at 635.630 kb on - strand, within PS417_02795 at 636.188 kb on - strand, within PS417_02800 at 636.640 kb on + strand, within PS417_02805 at 636.641 kb on - strand, within PS417_02805 at 636.658 kb on + strand, within PS417_02805 at 636.782 kb on + strand at 636.814 kb on + strand at 636.814 kb on + strand at 636.815 kb on - strand at 636.815 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 634,939 + +0.5 634,939 + -0.0 634,940 - -0.2 634,940 - -0.2 634,940 - -1.8 634,951 + +1.1 634,951 + -0.5 635,050 + +0.7 635,053 + -0.4 635,053 + -3.4 635,054 - -0.7 635,057 + -0.3 635,057 + +1.1 635,088 + -0.6 635,333 - PS417_02790 0.80 +0.5 635,377 - +0.1 635,417 + +0.5 635,418 - +0.4 635,485 - PS417_02795 0.18 +2.4 635,486 + PS417_02795 0.18 +0.7 635,486 + PS417_02795 0.18 +0.1 635,487 - PS417_02795 0.18 -0.2 635,501 + PS417_02795 0.21 +0.3 635,502 - PS417_02795 0.21 +0.2 635,540 + PS417_02795 0.28 +0.4 635,629 + PS417_02795 0.45 -0.1 635,629 + PS417_02795 0.45 -0.2 635,630 - PS417_02795 0.45 +0.3 636,188 - PS417_02800 0.51 -0.9 636,640 + PS417_02805 0.63 -1.6 636,641 - PS417_02805 0.63 +0.1 636,658 + PS417_02805 0.69 -1.5 636,782 + -0.2 636,814 + -0.4 636,814 + +0.3 636,815 - -1.0 636,815 - -0.3
Or see this region's nucleotide sequence