Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00175 and PS417_00180 are separated by 136 nucleotides PS417_00180 and PS417_00185 overlap by 1 nucleotides PS417_00185 and PS417_00190 are separated by 110 nucleotides
PS417_00175: PS417_00175 - CigR, at 37,312 to 37,752
_00175
PS417_00180: PS417_00180 - tryptophan synthase subunit alpha, at 37,889 to 38,698
_00180
PS417_00185: PS417_00185 - tryptophan synthase subunit beta, at 38,698 to 39,939
_00185
PS417_00190: PS417_00190 - LysR family transcriptional regulator, at 40,050 to 40,946
_00190
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 37.826 kb on - strand at 37.826 kb on - strand at 37.894 kb on + strand at 37.894 kb on + strand at 37.894 kb on + strand at 37.895 kb on - strand at 38.175 kb on + strand, within PS417_00180 at 38.294 kb on - strand, within PS417_00180 at 38.395 kb on - strand, within PS417_00180 at 38.729 kb on - strand at 38.729 kb on - strand at 38.940 kb on - strand, within PS417_00185 at 39.354 kb on - strand, within PS417_00185 at 39.513 kb on - strand, within PS417_00185 at 39.513 kb on - strand, within PS417_00185 at 39.513 kb on - strand, within PS417_00185 at 39.646 kb on - strand, within PS417_00185 at 39.917 kb on - strand at 39.917 kb on - strand at 40.525 kb on - strand, within PS417_00190 at 40.728 kb on + strand at 40.731 kb on + strand, within PS417_00190 at 40.731 kb on + strand, within PS417_00190 at 40.732 kb on - strand at 40.927 kb on + strand at 40.928 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 37,826 - -0.9 37,826 - -0.3 37,894 + -0.2 37,894 + -0.1 37,894 + +1.3 37,895 - -0.2 38,175 + PS417_00180 0.35 -3.5 38,294 - PS417_00180 0.50 -0.0 38,395 - PS417_00180 0.62 -0.7 38,729 - -0.1 38,729 - +0.2 38,940 - PS417_00185 0.19 -2.2 39,354 - PS417_00185 0.53 -1.0 39,513 - PS417_00185 0.66 -0.6 39,513 - PS417_00185 0.66 -0.7 39,513 - PS417_00185 0.66 -0.2 39,646 - PS417_00185 0.76 -0.1 39,917 - -2.3 39,917 - -1.0 40,525 - PS417_00190 0.53 -0.9 40,728 + -3.2 40,731 + PS417_00190 0.76 -0.9 40,731 + PS417_00190 0.76 +0.1 40,732 - +0.0 40,927 + -0.0 40,928 - -0.9
Or see this region's nucleotide sequence