Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01090 and PS417_01095 are separated by 371 nucleotides PS417_01095 and PS417_01100 are separated by 3 nucleotides PS417_01100 and PS417_01105 overlap by 1 nucleotides
PS417_01090: PS417_01090 - hypothetical protein, at 239,173 to 239,937
_01090
PS417_01095: PS417_01095 - amino acid ABC transporter ATP-binding protein, at 240,309 to 241,055
_01095
PS417_01100: PS417_01100 - amino acid ABC transporter permease, at 241,059 to 241,724
_01100
PS417_01105: PS417_01105 - cystine transporter subunit, at 241,724 to 242,518
_01105
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1 at 239.318 kb on + strand, within PS417_01090 at 239.318 kb on + strand, within PS417_01090 at 239.318 kb on + strand, within PS417_01090 at 239.377 kb on + strand, within PS417_01090 at 239.378 kb on - strand, within PS417_01090 at 239.591 kb on + strand, within PS417_01090 at 239.592 kb on - strand, within PS417_01090 at 239.635 kb on + strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.636 kb on - strand, within PS417_01090 at 239.687 kb on + strand, within PS417_01090 at 239.838 kb on - strand, within PS417_01090 at 239.938 kb on - strand at 239.941 kb on + strand at 239.941 kb on + strand at 239.942 kb on - strand at 239.991 kb on + strand at 240.061 kb on + strand at 240.062 kb on - strand at 240.062 kb on - strand at 240.176 kb on + strand at 240.202 kb on - strand at 240.245 kb on - strand at 240.263 kb on + strand at 240.282 kb on + strand at 240.567 kb on + strand, within PS417_01095 at 240.568 kb on - strand, within PS417_01095 at 240.568 kb on - strand, within PS417_01095 at 241.138 kb on + strand, within PS417_01100 at 241.159 kb on + strand, within PS417_01100 at 241.159 kb on + strand, within PS417_01100 at 241.159 kb on + strand, within PS417_01100 at 241.160 kb on - strand, within PS417_01100 at 241.160 kb on - strand, within PS417_01100 at 241.160 kb on - strand, within PS417_01100 at 241.499 kb on - strand, within PS417_01100 at 241.501 kb on + strand, within PS417_01100 at 241.502 kb on - strand, within PS417_01100 at 241.552 kb on + strand, within PS417_01100 at 241.749 kb on + strand at 241.995 kb on + strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 241.996 kb on - strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.043 kb on + strand, within PS417_01105 at 242.044 kb on - strand, within PS417_01105
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB remove 239,318 + PS417_01090 0.19 +0.7 239,318 + PS417_01090 0.19 +1.7 239,318 + PS417_01090 0.19 -0.5 239,377 + PS417_01090 0.27 -0.0 239,378 - PS417_01090 0.27 -1.3 239,591 + PS417_01090 0.55 -0.8 239,592 - PS417_01090 0.55 -0.2 239,635 + PS417_01090 0.60 +0.1 239,636 - PS417_01090 0.61 +1.4 239,636 - PS417_01090 0.61 -0.5 239,636 - PS417_01090 0.61 +1.4 239,636 - PS417_01090 0.61 -0.2 239,687 + PS417_01090 0.67 -2.1 239,838 - PS417_01090 0.87 -0.2 239,938 - -0.6 239,941 + -0.6 239,941 + +0.0 239,942 - -1.6 239,991 + +1.1 240,061 + +0.1 240,062 - -0.4 240,062 - +0.3 240,176 + +0.7 240,202 - -0.2 240,245 - +0.5 240,263 + -0.2 240,282 + -2.3 240,567 + PS417_01095 0.35 -1.1 240,568 - PS417_01095 0.35 -1.8 240,568 - PS417_01095 0.35 -2.3 241,138 + PS417_01100 0.12 -0.5 241,159 + PS417_01100 0.15 -0.0 241,159 + PS417_01100 0.15 -0.5 241,159 + PS417_01100 0.15 -0.5 241,160 - PS417_01100 0.15 +0.3 241,160 - PS417_01100 0.15 -0.3 241,160 - PS417_01100 0.15 -1.2 241,499 - PS417_01100 0.66 -0.8 241,501 + PS417_01100 0.66 -0.4 241,502 - PS417_01100 0.67 -0.0 241,552 + PS417_01100 0.74 +0.1 241,749 + -1.5 241,995 + PS417_01105 0.34 -0.4 241,996 - PS417_01105 0.34 -0.2 241,996 - PS417_01105 0.34 -0.0 241,996 - PS417_01105 0.34 -0.3 242,043 + PS417_01105 0.40 -0.3 242,043 + PS417_01105 0.40 +1.1 242,043 + PS417_01105 0.40 +0.5 242,044 - PS417_01105 0.40 +0.5
Or see this region's nucleotide sequence