Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04175 and PS417_04180 are separated by 158 nucleotides PS417_04180 and PS417_04185 are separated by 10 nucleotides PS417_04185 and PS417_04190 are separated by 152 nucleotides
PS417_04175: PS417_04175 - peptidase, at 936,771 to 937,190
_04175
PS417_04180: PS417_04180 - GntR family transcriptional regulator, at 937,349 to 938,098
_04180
PS417_04185: PS417_04185 - hypothetical protein, at 938,109 to 938,294
_04185
PS417_04190: PS417_04190 - phosphatidylcholine-hydrolyzing phospholipase, at 938,447 to 939,604
_04190
Position (kb) 938
939 Strain fitness (log2 ratio) -1
0
1
2 at 937.294 kb on - strand at 937.309 kb on + strand at 937.310 kb on - strand at 937.944 kb on - strand, within PS417_04180 at 937.944 kb on - strand, within PS417_04180 at 937.944 kb on - strand, within PS417_04180 at 937.944 kb on - strand, within PS417_04180 at 938.155 kb on + strand, within PS417_04185 at 938.185 kb on - strand, within PS417_04185 at 938.207 kb on - strand, within PS417_04185 at 938.207 kb on - strand, within PS417_04185 at 938.298 kb on + strand at 938.298 kb on + strand at 938.298 kb on + strand at 938.299 kb on - strand at 938.324 kb on + strand at 938.325 kb on - strand at 938.325 kb on - strand at 938.461 kb on + strand at 938.473 kb on - strand at 938.473 kb on - strand at 938.491 kb on - strand at 938.491 kb on - strand at 938.491 kb on - strand at 938.494 kb on + strand at 938.494 kb on + strand at 938.551 kb on + strand at 938.637 kb on + strand, within PS417_04190 at 938.637 kb on + strand, within PS417_04190 at 938.637 kb on + strand, within PS417_04190 at 938.638 kb on - strand, within PS417_04190 at 938.638 kb on - strand, within PS417_04190 at 938.674 kb on + strand, within PS417_04190 at 938.912 kb on + strand, within PS417_04190 at 938.977 kb on - strand, within PS417_04190 at 939.057 kb on + strand, within PS417_04190 at 939.187 kb on + strand, within PS417_04190 at 939.187 kb on + strand, within PS417_04190 at 939.187 kb on + strand, within PS417_04190 at 939.187 kb on + strand, within PS417_04190 at 939.188 kb on - strand, within PS417_04190
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 937,294 - +0.1 937,309 + -0.1 937,310 - +2.2 937,944 - PS417_04180 0.79 +0.1 937,944 - PS417_04180 0.79 -0.0 937,944 - PS417_04180 0.79 -0.6 937,944 - PS417_04180 0.79 -1.1 938,155 + PS417_04185 0.25 -0.8 938,185 - PS417_04185 0.41 -0.7 938,207 - PS417_04185 0.53 -1.5 938,207 - PS417_04185 0.53 -0.9 938,298 + -0.4 938,298 + +0.9 938,298 + -0.4 938,299 - -0.1 938,324 + -1.1 938,325 - +1.1 938,325 - +0.0 938,461 + -0.2 938,473 - -0.8 938,473 - +0.7 938,491 - -0.2 938,491 - +0.7 938,491 - +0.2 938,494 + +0.1 938,494 + -0.8 938,551 + +0.8 938,637 + PS417_04190 0.16 +0.8 938,637 + PS417_04190 0.16 +0.7 938,637 + PS417_04190 0.16 -1.1 938,638 - PS417_04190 0.16 -0.9 938,638 - PS417_04190 0.16 +1.0 938,674 + PS417_04190 0.20 +0.6 938,912 + PS417_04190 0.40 -0.6 938,977 - PS417_04190 0.46 +1.3 939,057 + PS417_04190 0.53 -0.2 939,187 + PS417_04190 0.64 -1.4 939,187 + PS417_04190 0.64 -1.2 939,187 + PS417_04190 0.64 +0.5 939,187 + PS417_04190 0.64 +1.1 939,188 - PS417_04190 0.64 +0.2
Or see this region's nucleotide sequence