Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03700 and PS417_03705 are separated by 110 nucleotides PS417_03705 and PS417_03710 are separated by 101 nucleotides
PS417_03700: PS417_03700 - TonB-dependent receptor, at 836,498 to 838,594
_03700
PS417_03705: PS417_03705 - 2-alkenal reductase, at 838,705 to 839,859
_03705
PS417_03710: PS417_03710 - metal-binding protein, at 839,961 to 840,719
_03710
Position (kb) 838
839
840 Strain fitness (log2 ratio) -2
-1
0
1
2 at 838.060 kb on + strand, within PS417_03700 at 838.061 kb on - strand, within PS417_03700 at 838.061 kb on - strand, within PS417_03700 at 838.128 kb on + strand, within PS417_03700 at 838.227 kb on + strand, within PS417_03700 at 838.227 kb on + strand, within PS417_03700 at 838.228 kb on - strand, within PS417_03700 at 838.261 kb on - strand, within PS417_03700 at 838.267 kb on - strand, within PS417_03700 at 838.476 kb on + strand at 838.476 kb on + strand at 838.477 kb on - strand at 838.597 kb on + strand at 838.597 kb on + strand at 838.597 kb on + strand at 838.598 kb on - strand at 838.670 kb on + strand at 838.670 kb on + strand at 838.670 kb on + strand at 838.670 kb on + strand at 838.670 kb on + strand at 838.671 kb on - strand at 838.671 kb on - strand at 838.706 kb on + strand at 838.707 kb on - strand at 838.792 kb on + strand at 838.792 kb on + strand at 839.510 kb on + strand, within PS417_03705 at 839.652 kb on - strand, within PS417_03705 at 839.713 kb on + strand, within PS417_03705 at 839.713 kb on + strand, within PS417_03705 at 839.713 kb on + strand, within PS417_03705 at 839.916 kb on - strand at 839.916 kb on - strand at 839.918 kb on - strand at 839.918 kb on - strand at 839.918 kb on - strand at 839.918 kb on - strand at 839.949 kb on + strand at 839.950 kb on - strand at 839.950 kb on - strand at 839.961 kb on - strand at 840.162 kb on + strand, within PS417_03710 at 840.507 kb on + strand, within PS417_03710 at 840.507 kb on + strand, within PS417_03710 at 840.508 kb on - strand, within PS417_03710 at 840.543 kb on + strand, within PS417_03710 at 840.543 kb on + strand, within PS417_03710 at 840.544 kb on - strand, within PS417_03710 at 840.643 kb on + strand, within PS417_03710 at 840.643 kb on + strand, within PS417_03710 at 840.643 kb on + strand, within PS417_03710 at 840.643 kb on + strand, within PS417_03710 at 840.644 kb on - strand at 840.758 kb on + strand at 840.758 kb on + strand at 840.773 kb on + strand at 840.807 kb on + strand at 840.807 kb on + strand at 840.808 kb on - strand at 840.808 kb on - strand at 840.845 kb on + strand at 840.845 kb on + strand at 840.845 kb on + strand at 840.845 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 838,060 + PS417_03700 0.74 -0.1 838,061 - PS417_03700 0.75 +0.3 838,061 - PS417_03700 0.75 +0.8 838,128 + PS417_03700 0.78 +0.7 838,227 + PS417_03700 0.82 -0.2 838,227 + PS417_03700 0.82 -0.3 838,228 - PS417_03700 0.82 +0.0 838,261 - PS417_03700 0.84 -0.2 838,267 - PS417_03700 0.84 +0.1 838,476 + -0.2 838,476 + -0.6 838,477 - +0.8 838,597 + +1.3 838,597 + -1.3 838,597 + -0.0 838,598 - -0.4 838,670 + +1.1 838,670 + +1.0 838,670 + +0.3 838,670 + -0.4 838,670 + +0.4 838,671 - +0.6 838,671 - +0.4 838,706 + -0.1 838,707 - -0.2 838,792 + -0.1 838,792 + +0.3 839,510 + PS417_03705 0.70 +0.3 839,652 - PS417_03705 0.82 -1.1 839,713 + PS417_03705 0.87 -2.1 839,713 + PS417_03705 0.87 -0.0 839,713 + PS417_03705 0.87 -0.8 839,916 - +0.2 839,916 - +0.2 839,918 - +0.5 839,918 - +0.6 839,918 - -0.1 839,918 - -0.2 839,949 + -0.0 839,950 - +0.2 839,950 - -0.0 839,961 - -0.4 840,162 + PS417_03710 0.26 +0.2 840,507 + PS417_03710 0.72 +0.1 840,507 + PS417_03710 0.72 +2.4 840,508 - PS417_03710 0.72 +1.4 840,543 + PS417_03710 0.77 -0.5 840,543 + PS417_03710 0.77 -0.6 840,544 - PS417_03710 0.77 +0.2 840,643 + PS417_03710 0.90 -0.3 840,643 + PS417_03710 0.90 -1.5 840,643 + PS417_03710 0.90 +0.3 840,643 + PS417_03710 0.90 +0.3 840,644 - +1.2 840,758 + +0.1 840,758 + +0.6 840,773 + -2.3 840,807 + -0.1 840,807 + +0.1 840,808 - -2.1 840,808 - -2.6 840,845 + +0.0 840,845 + -0.2 840,845 + -1.4 840,845 + -0.4
Or see this region's nucleotide sequence