Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03650 and PS417_03655 overlap by 4 nucleotides PS417_03655 and PS417_03660 overlap by 4 nucleotides PS417_03660 and PS417_03665 overlap by 8 nucleotides
PS417_03650: PS417_03650 - FAD-dependent oxidoreductase, at 827,137 to 828,384
_03650
PS417_03655: PS417_03655 - short-chain dehydrogenase, at 828,381 to 829,163
_03655
PS417_03660: PS417_03660 - transcriptional regulator, at 829,160 to 829,582
_03660
PS417_03665: PS417_03665 - deoxyribodipyrimidine photolyase, at 829,575 to 831,020
_03665
Position (kb) 829
830 Strain fitness (log2 ratio) -1
0
1
2 at 828.173 kb on - strand, within PS417_03650 at 828.194 kb on + strand, within PS417_03650 at 828.216 kb on + strand, within PS417_03650 at 828.236 kb on + strand, within PS417_03650 at 828.243 kb on + strand, within PS417_03650 at 828.273 kb on + strand at 828.273 kb on + strand at 828.336 kb on - strand at 828.384 kb on + strand at 828.384 kb on + strand at 828.384 kb on + strand at 828.385 kb on - strand at 828.385 kb on - strand at 828.385 kb on - strand at 828.683 kb on - strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.709 kb on + strand, within PS417_03655 at 828.815 kb on - strand, within PS417_03655 at 829.016 kb on - strand, within PS417_03655 at 829.218 kb on + strand, within PS417_03660 at 829.218 kb on + strand, within PS417_03660 at 829.219 kb on - strand, within PS417_03660 at 829.242 kb on + strand, within PS417_03660 at 829.243 kb on - strand, within PS417_03660 at 829.258 kb on - strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.422 kb on + strand, within PS417_03660 at 829.438 kb on - strand, within PS417_03660 at 829.825 kb on + strand, within PS417_03665 at 829.826 kb on - strand, within PS417_03665 at 829.826 kb on - strand, within PS417_03665 at 830.167 kb on + strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.351 kb on - strand, within PS417_03665 at 830.353 kb on + strand, within PS417_03665 at 830.551 kb on + strand, within PS417_03665
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 828,173 - PS417_03650 0.83 +0.3 828,194 + PS417_03650 0.85 +0.0 828,216 + PS417_03650 0.86 +1.0 828,236 + PS417_03650 0.88 +0.2 828,243 + PS417_03650 0.89 +0.6 828,273 + -0.7 828,273 + -0.8 828,336 - -0.0 828,384 + +1.2 828,384 + -0.4 828,384 + -0.6 828,385 - +0.7 828,385 - -1.5 828,385 - +0.3 828,683 - PS417_03655 0.39 -0.4 828,709 + PS417_03655 0.42 +0.6 828,709 + PS417_03655 0.42 -0.3 828,709 + PS417_03655 0.42 +0.1 828,815 - PS417_03655 0.55 +0.0 829,016 - PS417_03655 0.81 -1.1 829,218 + PS417_03660 0.14 +0.3 829,218 + PS417_03660 0.14 +2.1 829,219 - PS417_03660 0.14 -0.4 829,242 + PS417_03660 0.19 -0.1 829,243 - PS417_03660 0.20 -0.6 829,258 - PS417_03660 0.23 -1.3 829,422 + PS417_03660 0.62 -0.2 829,422 + PS417_03660 0.62 +0.0 829,422 + PS417_03660 0.62 +0.7 829,438 - PS417_03660 0.66 +0.1 829,825 + PS417_03665 0.17 +0.7 829,826 - PS417_03665 0.17 +0.3 829,826 - PS417_03665 0.17 +0.5 830,167 + PS417_03665 0.41 +0.7 830,351 - PS417_03665 0.54 +1.0 830,351 - PS417_03665 0.54 +0.2 830,351 - PS417_03665 0.54 +0.1 830,351 - PS417_03665 0.54 -0.3 830,353 + PS417_03665 0.54 -0.6 830,551 + PS417_03665 0.67 -0.3
Or see this region's nucleotide sequence