Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03520 and PS417_03525 are separated by 14 nucleotides PS417_03525 and PS417_03530 are separated by 1 nucleotides PS417_03530 and PS417_03535 are separated by 74 nucleotides PS417_03535 and PS417_03540 are separated by 2 nucleotides
PS417_03520: PS417_03520 - secretin, at 804,661 to 806,802
_03520
PS417_03525: PS417_03525 - hypothetical protein, at 806,817 to 807,209
_03525
PS417_03530: PS417_03530 - hypothetical protein, at 807,211 to 807,429
_03530
PS417_03535: PS417_03535 - type III secretion protein, at 807,504 to 808,115
_03535
PS417_03540: PS417_03540 - type III secretion protein, at 808,118 to 808,675
_03540
Position (kb) 806
807
808 Strain fitness (log2 ratio) -1
0
1
2 at 805.880 kb on + strand, within PS417_03520 at 805.880 kb on + strand, within PS417_03520 at 805.881 kb on - strand, within PS417_03520 at 805.903 kb on + strand, within PS417_03520 at 805.903 kb on + strand, within PS417_03520 at 806.279 kb on + strand, within PS417_03520 at 806.279 kb on + strand, within PS417_03520 at 806.605 kb on + strand at 806.796 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.802 kb on + strand at 806.803 kb on - strand at 806.803 kb on - strand at 806.803 kb on - strand at 806.818 kb on + strand at 807.132 kb on + strand, within PS417_03525 at 807.162 kb on + strand, within PS417_03525 at 807.187 kb on + strand at 807.273 kb on - strand, within PS417_03530 at 807.278 kb on + strand, within PS417_03530 at 807.359 kb on + strand, within PS417_03530 at 807.360 kb on - strand, within PS417_03530 at 807.378 kb on + strand, within PS417_03530 at 807.378 kb on + strand, within PS417_03530 at 807.436 kb on - strand at 807.436 kb on - strand at 807.480 kb on - strand at 807.491 kb on + strand at 807.527 kb on + strand at 807.527 kb on + strand at 807.616 kb on - strand at 807.734 kb on + strand, within PS417_03535 at 807.735 kb on - strand, within PS417_03535 at 807.779 kb on + strand, within PS417_03535 at 807.779 kb on + strand, within PS417_03535 at 807.780 kb on - strand, within PS417_03535 at 807.782 kb on + strand, within PS417_03535 at 807.810 kb on + strand, within PS417_03535 at 807.811 kb on - strand, within PS417_03535 at 807.822 kb on - strand, within PS417_03535 at 807.921 kb on + strand, within PS417_03535 at 807.975 kb on + strand, within PS417_03535 at 807.975 kb on + strand at 807.975 kb on + strand, within PS417_03535 at 807.976 kb on - strand, within PS417_03535 at 807.978 kb on + strand, within PS417_03535 at 807.979 kb on - strand, within PS417_03535 at 808.031 kb on - strand, within PS417_03535 at 808.119 kb on + strand at 808.174 kb on + strand, within PS417_03540
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 805,880 + PS417_03520 0.57 -0.2 805,880 + PS417_03520 0.57 +0.1 805,881 - PS417_03520 0.57 +0.9 805,903 + PS417_03520 0.58 +1.8 805,903 + PS417_03520 0.58 -0.0 806,279 + PS417_03520 0.76 -0.2 806,279 + PS417_03520 0.76 -0.3 806,605 + -0.3 806,796 + -0.0 806,802 + -1.3 806,802 + +0.3 806,802 + +0.6 806,802 + +0.5 806,802 + +1.2 806,802 + +0.6 806,803 - +0.3 806,803 - +2.4 806,803 - +1.0 806,818 + -0.2 807,132 + PS417_03525 0.80 +0.2 807,162 + PS417_03525 0.88 -0.9 807,187 + +0.5 807,273 - PS417_03530 0.28 -0.2 807,278 + PS417_03530 0.31 -1.2 807,359 + PS417_03530 0.68 -0.1 807,360 - PS417_03530 0.68 +0.1 807,378 + PS417_03530 0.76 +0.2 807,378 + PS417_03530 0.76 -0.2 807,436 - -0.0 807,436 - -0.4 807,480 - -0.0 807,491 + -0.1 807,527 + +0.5 807,527 + +1.7 807,616 - -0.9 807,734 + PS417_03535 0.38 +0.2 807,735 - PS417_03535 0.38 +0.4 807,779 + PS417_03535 0.45 -0.0 807,779 + PS417_03535 0.45 -0.4 807,780 - PS417_03535 0.45 -0.2 807,782 + PS417_03535 0.45 -0.7 807,810 + PS417_03535 0.50 +1.2 807,811 - PS417_03535 0.50 +0.1 807,822 - PS417_03535 0.52 -0.4 807,921 + PS417_03535 0.68 +1.8 807,975 + PS417_03535 0.77 +0.7 807,975 + -0.2 807,975 + PS417_03535 0.77 +0.4 807,976 - PS417_03535 0.77 -0.4 807,978 + PS417_03535 0.77 -0.4 807,979 - PS417_03535 0.78 -0.1 808,031 - PS417_03535 0.86 -0.3 808,119 + -0.3 808,174 + PS417_03540 0.10 -0.6
Or see this region's nucleotide sequence