Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03010 and PS417_03015 are separated by 178 nucleotides PS417_03015 and PS417_03020 are separated by 99 nucleotides PS417_03020 and PS417_03025 are separated by 251 nucleotides
PS417_03010: PS417_03010 - XRE family transcriptional regulator, at 688,835 to 690,178
_03010
PS417_03015: PS417_03015 - hypothetical protein, at 690,357 to 695,255
_03015
PS417_03020: PS417_03020 - MFS transporter, at 695,355 to 695,648
_03020
PS417_03025: PS417_03025 - penicillin-binding protein 1C, at 695,900 to 698,191
_03025
Position (kb) 690
691
692
693
694
695
696 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 689.724 kb on + strand, within PS417_03010 at 689.725 kb on - strand, within PS417_03010 at 689.855 kb on + strand, within PS417_03010 at 689.995 kb on + strand, within PS417_03010 at 689.996 kb on - strand, within PS417_03010 at 689.997 kb on + strand, within PS417_03010 at 689.997 kb on + strand, within PS417_03010 at 689.997 kb on + strand, within PS417_03010 at 689.998 kb on - strand, within PS417_03010 at 690.167 kb on + strand at 690.167 kb on + strand at 690.168 kb on - strand at 690.316 kb on + strand at 690.316 kb on + strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.317 kb on - strand at 690.318 kb on + strand at 690.318 kb on + strand at 690.319 kb on - strand at 690.319 kb on - strand at 690.319 kb on - strand at 690.319 kb on - strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.320 kb on + strand at 690.321 kb on - strand at 690.321 kb on - strand at 690.362 kb on + strand at 690.362 kb on + strand at 690.363 kb on - strand at 690.553 kb on + strand at 690.553 kb on + strand at 690.554 kb on - strand at 690.996 kb on + strand, within PS417_03015 at 690.996 kb on + strand, within PS417_03015 at 691.161 kb on + strand, within PS417_03015 at 691.162 kb on - strand, within PS417_03015 at 691.162 kb on - strand, within PS417_03015 at 691.190 kb on + strand, within PS417_03015 at 691.415 kb on + strand, within PS417_03015 at 691.415 kb on + strand, within PS417_03015 at 691.416 kb on - strand, within PS417_03015 at 691.669 kb on - strand, within PS417_03015 at 691.756 kb on - strand, within PS417_03015 at 691.811 kb on + strand, within PS417_03015 at 692.240 kb on - strand, within PS417_03015 at 692.320 kb on - strand, within PS417_03015 at 692.352 kb on + strand, within PS417_03015 at 692.352 kb on + strand, within PS417_03015 at 692.353 kb on - strand, within PS417_03015 at 692.647 kb on - strand, within PS417_03015 at 692.760 kb on + strand, within PS417_03015 at 693.060 kb on + strand, within PS417_03015 at 693.454 kb on + strand, within PS417_03015 at 693.454 kb on + strand, within PS417_03015 at 693.454 kb on + strand, within PS417_03015 at 693.454 kb on + strand at 693.454 kb on + strand, within PS417_03015 at 693.454 kb on + strand, within PS417_03015 at 693.454 kb on + strand, within PS417_03015 at 693.840 kb on + strand, within PS417_03015 at 693.841 kb on - strand, within PS417_03015 at 693.871 kb on + strand, within PS417_03015 at 693.872 kb on - strand, within PS417_03015 at 693.872 kb on - strand at 693.872 kb on - strand, within PS417_03015 at 693.872 kb on - strand, within PS417_03015 at 693.993 kb on + strand, within PS417_03015 at 694.053 kb on + strand, within PS417_03015 at 694.053 kb on + strand, within PS417_03015 at 694.054 kb on - strand, within PS417_03015 at 694.054 kb on - strand, within PS417_03015 at 694.143 kb on + strand, within PS417_03015 at 694.143 kb on + strand, within PS417_03015 at 694.148 kb on - strand, within PS417_03015 at 694.148 kb on - strand, within PS417_03015 at 694.177 kb on - strand, within PS417_03015 at 695.083 kb on - strand at 695.083 kb on - strand at 695.083 kb on - strand at 695.257 kb on - strand at 695.279 kb on - strand at 695.335 kb on - strand at 695.335 kb on - strand at 695.335 kb on - strand at 695.346 kb on - strand at 695.346 kb on - strand at 695.588 kb on + strand, within PS417_03020 at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.708 kb on + strand at 695.708 kb on + strand at 695.708 kb on + strand at 695.752 kb on + strand at 695.817 kb on + strand at 695.877 kb on + strand at 695.878 kb on - strand at 696.072 kb on - strand at 696.072 kb on - strand at 696.075 kb on - strand at 696.095 kb on + strand at 696.095 kb on + strand at 696.096 kb on - strand at 696.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 689,724 + PS417_03010 0.66 -0.0 689,725 - PS417_03010 0.66 -2.4 689,855 + PS417_03010 0.76 -0.9 689,995 + PS417_03010 0.86 -0.6 689,996 - PS417_03010 0.86 +0.0 689,997 + PS417_03010 0.86 +1.4 689,997 + PS417_03010 0.86 -0.2 689,997 + PS417_03010 0.86 -0.1 689,998 - PS417_03010 0.87 -0.1 690,167 + +0.3 690,167 + -1.5 690,168 - -0.9 690,316 + +1.2 690,316 + +0.3 690,317 - -0.7 690,317 - +1.0 690,317 - -0.6 690,317 - -0.5 690,317 - +2.2 690,317 - +0.1 690,318 + +1.8 690,318 + +0.3 690,319 - -0.4 690,319 - +0.2 690,319 - +0.1 690,319 - +0.2 690,320 + +0.2 690,320 + -0.1 690,320 + -0.6 690,320 + -0.1 690,320 + +0.3 690,320 + -0.4 690,321 - -0.0 690,321 - -0.1 690,362 + +0.1 690,362 + -0.3 690,363 - -0.1 690,553 + -0.5 690,553 + -0.5 690,554 - -0.1 690,996 + PS417_03015 0.13 +0.4 690,996 + PS417_03015 0.13 -0.5 691,161 + PS417_03015 0.16 -0.3 691,162 - PS417_03015 0.16 -0.4 691,162 - PS417_03015 0.16 -0.7 691,190 + PS417_03015 0.17 -0.4 691,415 + PS417_03015 0.22 -0.2 691,415 + PS417_03015 0.22 +0.1 691,416 - PS417_03015 0.22 -0.8 691,669 - PS417_03015 0.27 +0.2 691,756 - PS417_03015 0.29 -0.2 691,811 + PS417_03015 0.30 -1.0 692,240 - PS417_03015 0.38 -1.0 692,320 - PS417_03015 0.40 +1.8 692,352 + PS417_03015 0.41 -0.5 692,352 + PS417_03015 0.41 -1.5 692,353 - PS417_03015 0.41 -0.3 692,647 - PS417_03015 0.47 -0.3 692,760 + PS417_03015 0.49 -0.7 693,060 + PS417_03015 0.55 +0.5 693,454 + PS417_03015 0.63 -1.8 693,454 + PS417_03015 0.63 -0.8 693,454 + PS417_03015 0.63 -0.1 693,454 + +0.8 693,454 + PS417_03015 0.63 +0.4 693,454 + PS417_03015 0.63 -1.2 693,454 + PS417_03015 0.63 -0.4 693,840 + PS417_03015 0.71 -0.4 693,841 - PS417_03015 0.71 -0.7 693,871 + PS417_03015 0.72 -0.2 693,872 - PS417_03015 0.72 -0.9 693,872 - -4.0 693,872 - PS417_03015 0.72 -1.4 693,872 - PS417_03015 0.72 -0.4 693,993 + PS417_03015 0.74 -0.3 694,053 + PS417_03015 0.75 -0.2 694,053 + PS417_03015 0.75 -0.2 694,054 - PS417_03015 0.75 +0.4 694,054 - PS417_03015 0.75 -0.3 694,143 + PS417_03015 0.77 -1.9 694,143 + PS417_03015 0.77 -1.0 694,148 - PS417_03015 0.77 -1.3 694,148 - PS417_03015 0.77 -1.3 694,177 - PS417_03015 0.78 -0.7 695,083 - +0.6 695,083 - +0.2 695,083 - -0.4 695,257 - -0.3 695,279 - -0.3 695,335 - -0.7 695,335 - -0.3 695,335 - -0.6 695,346 - -1.4 695,346 - +0.4 695,588 + PS417_03020 0.79 +0.2 695,648 + -1.0 695,648 + -0.4 695,648 + +0.1 695,648 + +0.0 695,648 + +0.9 695,648 + -0.6 695,648 + +1.2 695,648 + -0.9 695,648 + -1.8 695,648 + +0.2 695,649 - +0.2 695,649 - -0.5 695,649 - +0.1 695,649 - +1.6 695,649 - -0.2 695,649 - -0.8 695,649 - -0.4 695,649 - -1.2 695,708 + +0.0 695,708 + -0.9 695,708 + +0.4 695,752 + -1.4 695,817 + +0.4 695,877 + +0.2 695,878 - +0.0 696,072 - -0.6 696,072 - -1.3 696,075 - -1.5 696,095 + +0.0 696,095 + -1.5 696,096 - -1.1 696,113 + -0.2
Or see this region's nucleotide sequence