Strain Fitness in Pseudomonas simiae WCS417 around PS417_02955

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02950 and PS417_02955 are separated by 185 nucleotidesPS417_02955 and PS417_02960 are separated by 30 nucleotides PS417_02950: PS417_02950 - tRNA-dihydrouridine synthase B, at 674,263 to 675,276 _02950 PS417_02955: PS417_02955 - hypothetical protein, at 675,462 to 676,676 _02955 PS417_02960: PS417_02960 - ribosomal protein L11 methyltransferase, at 676,707 to 677,585 _02960 Position (kb) 675 676 677Strain fitness (log2 ratio) -1 0 1at 675.161 kb on - strand, within PS417_02950at 675.185 kb on - strandat 675.245 kb on - strandat 675.250 kb on - strandat 675.250 kb on - strandat 675.250 kb on - strandat 675.250 kb on - strandat 675.250 kb on - strandat 675.250 kb on - strandat 675.250 kb on - strandat 675.277 kb on - strandat 675.277 kb on - strandat 675.307 kb on - strandat 675.491 kb on - strandat 675.503 kb on + strandat 675.533 kb on + strandat 675.534 kb on - strandat 675.691 kb on + strand, within PS417_02955at 675.691 kb on + strand, within PS417_02955at 675.691 kb on + strand, within PS417_02955at 675.692 kb on - strand, within PS417_02955at 675.692 kb on - strand, within PS417_02955at 675.877 kb on + strand, within PS417_02955at 675.878 kb on - strand, within PS417_02955at 676.708 kb on + strandat 676.911 kb on + strand, within PS417_02960at 676.912 kb on - strand, within PS417_02960at 676.948 kb on + strand, within PS417_02960at 676.949 kb on - strand, within PS417_02960at 677.534 kb on - strandat 677.534 kb on - strandat 677.534 kb on - strandat 677.534 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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675,161 - PS417_02950 0.89 +0.6
675,185 - +0.1
675,245 - +1.3
675,250 - -0.7
675,250 - -0.4
675,250 - -0.3
675,250 - -0.7
675,250 - -0.3
675,250 - -0.3
675,250 - -0.7
675,277 - -0.8
675,277 - -0.4
675,307 - -0.4
675,491 - -1.7
675,503 + +0.4
675,533 + +0.5
675,534 - -0.3
675,691 + PS417_02955 0.19 +0.9
675,691 + PS417_02955 0.19 -0.0
675,691 + PS417_02955 0.19 +0.5
675,692 - PS417_02955 0.19 +0.1
675,692 - PS417_02955 0.19 +0.3
675,877 + PS417_02955 0.34 -0.1
675,878 - PS417_02955 0.34 +0.7
676,708 + +0.6
676,911 + PS417_02960 0.23 -0.7
676,912 - PS417_02960 0.23 +0.5
676,948 + PS417_02960 0.27 -0.5
676,949 - PS417_02960 0.28 +0.1
677,534 - +0.3
677,534 - +0.1
677,534 - -0.1
677,534 - -0.2

Or see this region's nucleotide sequence