Strain Fitness in Pseudomonas simiae WCS417 around PS417_26630

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
5,754,406	+		PS417_26620	0.75	-0.2
5,754,407	-		PS417_26620	0.75	-0.2
5,754,418	+		PS417_26620	0.76	-0.9
5,754,418	+		PS417_26620	0.76	-1.7
5,754,418	+		PS417_26620	0.76	+0.2
5,754,418	+		PS417_26620	0.76	+0.0
5,754,418	+		PS417_26620	0.76	+0.3
5,754,418	+		PS417_26620	0.76	-0.1
5,754,419	-		PS417_26620	0.76	+0.1
5,754,419	-		PS417_26620	0.76	+0.4
5,754,419	-		PS417_26620	0.76	-0.6
5,754,419	-		PS417_26620	0.76	+1.1
5,754,419	-		PS417_26620	0.76	+0.8
5,754,419	-		PS417_26620	0.76	+0.5
5,754,419	-		PS417_26620	0.76	+1.3
5,754,423	-		PS417_26620	0.76	-0.1
5,754,657	+				-0.2
5,754,658	-				+0.0
5,754,737	-				+1.4
5,754,850	+				-1.3
5,754,851	-				+0.0
5,754,855	+				+0.2
5,754,855	+				+0.3
5,754,856	-				+0.4
5,754,966	+				+0.4
5,754,967	-				+1.9
5,755,036	+		PS417_26625	0.12	-0.0
5,755,037	-		PS417_26625	0.12	-0.6
5,755,083	+		PS417_26625	0.23	+0.1
5,755,083	+		PS417_26625	0.23	+0.4
5,755,083	+		PS417_26625	0.23	-0.9
5,755,084	-		PS417_26625	0.23	-0.1
5,755,092	+		PS417_26625	0.25	+0.9
5,755,093	-		PS417_26625	0.25	+0.1
5,755,162	+		PS417_26625	0.41	-0.1
5,755,162	+		PS417_26625	0.41	-1.2
5,755,254	+		PS417_26625	0.62	-0.0
5,755,254	+		PS417_26625	0.62	+0.4
5,755,254	+		PS417_26625	0.62	-0.7
5,755,255	-		PS417_26625	0.63	+0.5
5,755,255	-		PS417_26625	0.63	+0.0
5,755,255	-		PS417_26625	0.63	-0.1
5,755,255	-		PS417_26625	0.63	+0.1
5,755,283	+		PS417_26625	0.69	-0.6
5,755,403	+				-0.8
5,755,597	+		PS417_26630	0.34	-0.1
5,755,597	+		PS417_26630	0.34	-0.8
5,755,597	+		PS417_26630	0.34	+0.0
5,755,629	+		PS417_26630	0.40	-0.6
5,755,629	+		PS417_26630	0.40	+0.2
5,755,629	+		PS417_26630	0.40	+0.9
5,755,629	+		PS417_26630	0.40	+0.1
5,755,713	+		PS417_26630	0.53	+1.1
5,755,713	+		PS417_26630	0.53	-0.7
5,755,774	+		PS417_26630	0.63	-0.2
5,755,801	+		PS417_26630	0.67	-0.7
5,755,802	-		PS417_26630	0.67	-0.7
5,756,119	+		PS417_26635	0.20	+0.9
5,756,119	+		PS417_26635	0.20	+0.2
5,756,119	+		PS417_26635	0.20	-0.1
5,756,272	+		PS417_26635	0.84	-0.7
5,756,322	+				-0.4
5,756,408	-				-0.2
5,756,498	-				+0.8
5,756,498	-				-0.1
5,756,642	+				+0.3
5,756,652	+				+0.6
5,756,652	+				-0.6
5,756,652	+				+0.1
5,756,652	+				-1.3
5,756,652	+				-0.4
5,756,653	-				+0.6
5,756,653	-				-0.3
5,756,653	-				-0.1
5,756,653	-				-0.2
5,756,653	-				-0.1
5,756,656	+				-0.9
5,756,656	+				+0.7
5,756,656	+				-0.2
5,756,656	+				+0.4
5,756,656	+				-0.3
5,756,656	+				+0.4
5,756,656	+				-0.8
5,756,657	-				-1.2
5,756,657	-				+0.9
5,756,657	-				+0.1
5,756,702	+		PS417_26640	0.28	+0.0
5,756,702	+		PS417_26640	0.28	-0.4
5,756,703	-		PS417_26640	0.28	-0.3
5,756,778	-		PS417_26640	0.63	-1.8
5,756,778	-		PS417_26640	0.63	+0.0