Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02605 and PS417_02610 are separated by 157 nucleotides PS417_02610 and PS417_02615 overlap by 1 nucleotides PS417_02615 and PS417_02620 are separated by 46 nucleotides
PS417_02605: PS417_02605 - IMP dehydrogenase, at 593,309 to 596,599
_02605
PS417_02610: PS417_02610 - hypothetical protein, at 596,757 to 599,243
_02610
PS417_02615: PS417_02615 - transglutaminase, at 599,243 to 600,133
_02615
PS417_02620: PS417_02620 - hypothetical protein, at 600,180 to 600,362
_02620
Position (kb) 596
597
598
599
600 Strain fitness (log2 ratio) -2
-1
0
1
2 at 596.119 kb on - strand, within PS417_02605 at 596.156 kb on + strand, within PS417_02605 at 596.607 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.660 kb on - strand at 596.660 kb on - strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.703 kb on + strand at 596.704 kb on - strand at 596.704 kb on - strand at 596.724 kb on - strand at 596.724 kb on - strand at 596.799 kb on + strand at 596.799 kb on + strand at 596.800 kb on - strand at 596.800 kb on - strand at 596.940 kb on + strand at 596.940 kb on + strand at 596.940 kb on + strand at 596.941 kb on - strand at 596.941 kb on - strand at 596.941 kb on - strand at 596.950 kb on - strand at 596.950 kb on - strand at 597.146 kb on + strand, within PS417_02610 at 597.147 kb on - strand, within PS417_02610 at 597.443 kb on + strand, within PS417_02610 at 597.484 kb on - strand, within PS417_02610 at 597.959 kb on + strand, within PS417_02610 at 597.960 kb on - strand, within PS417_02610 at 597.960 kb on - strand, within PS417_02610 at 597.981 kb on + strand, within PS417_02610 at 597.982 kb on - strand, within PS417_02610 at 598.075 kb on - strand, within PS417_02610 at 598.278 kb on + strand, within PS417_02610 at 598.279 kb on - strand, within PS417_02610 at 598.283 kb on - strand, within PS417_02610 at 598.283 kb on - strand, within PS417_02610 at 598.283 kb on - strand, within PS417_02610 at 598.378 kb on - strand, within PS417_02610 at 598.715 kb on + strand, within PS417_02610 at 598.875 kb on + strand at 599.285 kb on + strand at 599.286 kb on - strand at 599.286 kb on - strand at 599.428 kb on + strand at 599.497 kb on - strand, within PS417_02615 at 599.579 kb on - strand, within PS417_02615 at 599.628 kb on - strand, within PS417_02615 at 599.704 kb on - strand, within PS417_02615 at 599.867 kb on + strand, within PS417_02615 at 599.867 kb on + strand at 599.868 kb on - strand, within PS417_02615 at 599.868 kb on - strand, within PS417_02615 at 599.869 kb on + strand, within PS417_02615 at 599.870 kb on - strand, within PS417_02615 at 600.072 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 596,119 - PS417_02605 0.85 +0.2 596,156 + PS417_02605 0.87 -0.5 596,607 + -0.5 596,659 + -0.4 596,659 + +0.4 596,659 + -0.3 596,659 + +0.5 596,659 + -0.4 596,660 - -1.5 596,660 - +0.4 596,703 + -0.6 596,703 + +1.8 596,703 + +0.4 596,703 + +1.6 596,703 + -0.4 596,703 + -0.6 596,704 - -1.9 596,704 - -0.2 596,724 - -1.4 596,724 - -0.6 596,799 + -0.5 596,799 + +0.0 596,800 - -0.9 596,800 - +1.3 596,940 + -0.3 596,940 + +0.8 596,940 + +0.6 596,941 - -1.4 596,941 - +0.1 596,941 - -0.7 596,950 - -0.4 596,950 - +0.6 597,146 + PS417_02610 0.16 +1.3 597,147 - PS417_02610 0.16 -1.8 597,443 + PS417_02610 0.28 +0.9 597,484 - PS417_02610 0.29 -1.8 597,959 + PS417_02610 0.48 -0.5 597,960 - PS417_02610 0.48 -0.5 597,960 - PS417_02610 0.48 -0.5 597,981 + PS417_02610 0.49 -0.3 597,982 - PS417_02610 0.49 +0.1 598,075 - PS417_02610 0.53 -0.8 598,278 + PS417_02610 0.61 -0.9 598,279 - PS417_02610 0.61 -0.1 598,283 - PS417_02610 0.61 -1.2 598,283 - PS417_02610 0.61 -0.0 598,283 - PS417_02610 0.61 -0.6 598,378 - PS417_02610 0.65 +0.4 598,715 + PS417_02610 0.79 -1.1 598,875 + +2.1 599,285 + -0.3 599,286 - +0.0 599,286 - +0.9 599,428 + +1.7 599,497 - PS417_02615 0.29 -2.0 599,579 - PS417_02615 0.38 +0.5 599,628 - PS417_02615 0.43 -0.6 599,704 - PS417_02615 0.52 +0.5 599,867 + PS417_02615 0.70 -0.1 599,867 + +0.1 599,868 - PS417_02615 0.70 -1.2 599,868 - PS417_02615 0.70 -0.4 599,869 + PS417_02615 0.70 -0.3 599,870 - PS417_02615 0.70 +0.9 600,072 + -1.0
Or see this region's nucleotide sequence