Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24820 and PS417_24825 overlap by 4 nucleotides PS417_24825 and PS417_24830 are separated by 92 nucleotides PS417_24830 and PS417_24835 are separated by 305 nucleotides
PS417_24820: PS417_24820 - ethanolamine ammonia-lyase, at 5,383,980 to 5,385,374
_24820
PS417_24825: PS417_24825 - ethanolamine ammonia-lyase, at 5,385,371 to 5,386,204
_24825
PS417_24830: PS417_24830 - GNAT family acetyltransferase, at 5,386,297 to 5,386,755
_24830
PS417_24835: PS417_24835 - hypothetical protein, at 5,387,061 to 5,387,717
_24835
Position (kb) 5385
5386
5387 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5384.480 kb on + strand, within PS417_24820 at 5384.698 kb on + strand, within PS417_24820 at 5384.838 kb on + strand, within PS417_24820 at 5384.839 kb on - strand, within PS417_24820 at 5384.957 kb on + strand, within PS417_24820 at 5384.958 kb on - strand, within PS417_24820 at 5384.973 kb on - strand, within PS417_24820 at 5384.991 kb on + strand, within PS417_24820 at 5384.992 kb on - strand, within PS417_24820 at 5385.046 kb on + strand, within PS417_24820 at 5385.046 kb on + strand, within PS417_24820 at 5385.047 kb on - strand, within PS417_24820 at 5385.047 kb on - strand, within PS417_24820 at 5385.078 kb on + strand, within PS417_24820 at 5385.079 kb on - strand, within PS417_24820 at 5385.185 kb on + strand, within PS417_24820 at 5385.185 kb on + strand, within PS417_24820 at 5385.185 kb on + strand, within PS417_24820 at 5385.186 kb on - strand, within PS417_24820 at 5385.186 kb on - strand, within PS417_24820 at 5385.195 kb on + strand, within PS417_24820 at 5385.195 kb on + strand, within PS417_24820 at 5385.195 kb on + strand, within PS417_24820 at 5385.630 kb on - strand, within PS417_24825 at 5385.732 kb on + strand, within PS417_24825 at 5385.766 kb on + strand, within PS417_24825 at 5385.962 kb on + strand, within PS417_24825 at 5385.962 kb on + strand, within PS417_24825 at 5385.963 kb on - strand, within PS417_24825 at 5385.972 kb on - strand, within PS417_24825 at 5385.972 kb on - strand, within PS417_24825 at 5385.972 kb on - strand, within PS417_24825 at 5385.972 kb on - strand, within PS417_24825 at 5386.023 kb on + strand, within PS417_24825 at 5386.043 kb on + strand, within PS417_24825 at 5386.043 kb on + strand, within PS417_24825 at 5386.070 kb on + strand, within PS417_24825 at 5386.236 kb on - strand at 5386.271 kb on - strand at 5386.499 kb on - strand, within PS417_24830 at 5386.552 kb on + strand, within PS417_24830 at 5386.553 kb on - strand, within PS417_24830 at 5386.553 kb on - strand, within PS417_24830 at 5386.553 kb on - strand, within PS417_24830 at 5386.553 kb on - strand, within PS417_24830 at 5386.553 kb on - strand, within PS417_24830 at 5386.553 kb on - strand, within PS417_24830 at 5386.662 kb on + strand, within PS417_24830 at 5386.663 kb on - strand, within PS417_24830 at 5386.688 kb on - strand, within PS417_24830 at 5386.729 kb on + strand at 5386.730 kb on - strand at 5386.887 kb on + strand at 5386.887 kb on + strand at 5386.887 kb on + strand at 5386.888 kb on - strand at 5386.954 kb on - strand at 5386.975 kb on + strand at 5386.990 kb on - strand at 5386.990 kb on - strand at 5386.990 kb on - strand at 5386.990 kb on - strand at 5386.998 kb on - strand at 5387.103 kb on + strand at 5387.120 kb on - strand at 5387.127 kb on + strand, within PS417_24835 at 5387.143 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 5,384,480 + PS417_24820 0.36 -0.0 5,384,698 + PS417_24820 0.51 -0.6 5,384,838 + PS417_24820 0.62 +1.3 5,384,839 - PS417_24820 0.62 +0.0 5,384,957 + PS417_24820 0.70 -0.4 5,384,958 - PS417_24820 0.70 +1.1 5,384,973 - PS417_24820 0.71 +0.8 5,384,991 + PS417_24820 0.72 -0.4 5,384,992 - PS417_24820 0.73 -1.9 5,385,046 + PS417_24820 0.76 -0.9 5,385,046 + PS417_24820 0.76 -0.3 5,385,047 - PS417_24820 0.76 +2.1 5,385,047 - PS417_24820 0.76 -1.3 5,385,078 + PS417_24820 0.79 -0.2 5,385,079 - PS417_24820 0.79 -1.6 5,385,185 + PS417_24820 0.86 -1.2 5,385,185 + PS417_24820 0.86 -0.1 5,385,185 + PS417_24820 0.86 +1.1 5,385,186 - PS417_24820 0.86 +0.4 5,385,186 - PS417_24820 0.86 -0.4 5,385,195 + PS417_24820 0.87 -0.1 5,385,195 + PS417_24820 0.87 -0.3 5,385,195 + PS417_24820 0.87 -0.4 5,385,630 - PS417_24825 0.31 -1.7 5,385,732 + PS417_24825 0.43 -0.5 5,385,766 + PS417_24825 0.47 -2.6 5,385,962 + PS417_24825 0.71 +1.7 5,385,962 + PS417_24825 0.71 -0.4 5,385,963 - PS417_24825 0.71 -0.9 5,385,972 - PS417_24825 0.72 -0.9 5,385,972 - PS417_24825 0.72 -0.2 5,385,972 - PS417_24825 0.72 -0.4 5,385,972 - PS417_24825 0.72 -0.3 5,386,023 + PS417_24825 0.78 +1.5 5,386,043 + PS417_24825 0.81 -1.1 5,386,043 + PS417_24825 0.81 -0.7 5,386,070 + PS417_24825 0.84 -0.1 5,386,236 - -0.8 5,386,271 - -0.2 5,386,499 - PS417_24830 0.44 +0.7 5,386,552 + PS417_24830 0.56 -0.9 5,386,553 - PS417_24830 0.56 +0.6 5,386,553 - PS417_24830 0.56 -0.5 5,386,553 - PS417_24830 0.56 -0.4 5,386,553 - PS417_24830 0.56 -0.3 5,386,553 - PS417_24830 0.56 -0.2 5,386,553 - PS417_24830 0.56 -0.3 5,386,662 + PS417_24830 0.80 -0.4 5,386,663 - PS417_24830 0.80 -0.9 5,386,688 - PS417_24830 0.85 +0.0 5,386,729 + -0.9 5,386,730 - -0.9 5,386,887 + +0.4 5,386,887 + -0.7 5,386,887 + -0.9 5,386,888 - -0.7 5,386,954 - -0.8 5,386,975 + -0.5 5,386,990 - +0.6 5,386,990 - +0.3 5,386,990 - -0.7 5,386,990 - +0.3 5,386,998 - -0.6 5,387,103 + -2.5 5,387,120 - -1.8 5,387,127 + PS417_24835 0.10 -0.2 5,387,143 - -1.1
Or see this region's nucleotide sequence