Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24735 and PS417_24740 are separated by 69 nucleotides PS417_24740 and PS417_24745 overlap by 1 nucleotides PS417_24745 and PS417_24750 are separated by 174 nucleotides
PS417_24735: PS417_24735 - ribosome-associated protein IOJAP, at 5,366,599 to 5,367,093
_24735
PS417_24740: PS417_24740 - nicotinate-nucleotide adenylyltransferase, at 5,367,163 to 5,367,807
_24740
PS417_24745: PS417_24745 - gamma-glutamyl phosphate reductase, at 5,367,807 to 5,369,072
_24745
PS417_24750: PS417_24750 - 3-methyladenine DNA glycosylase, at 5,369,247 to 5,369,930
_24750
Position (kb) 5367
5368
5369
5370 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 5367.114 kb on - strand at 5367.114 kb on - strand at 5367.114 kb on - strand at 5367.114 kb on - strand at 5368.133 kb on - strand, within PS417_24745 at 5368.370 kb on - strand, within PS417_24745 at 5368.370 kb on - strand, within PS417_24745 at 5368.370 kb on - strand, within PS417_24745 at 5368.501 kb on - strand, within PS417_24745 at 5369.110 kb on - strand at 5369.110 kb on - strand at 5369.110 kb on - strand at 5369.112 kb on - strand at 5369.112 kb on - strand at 5369.112 kb on - strand at 5369.112 kb on - strand at 5369.112 kb on - strand at 5369.168 kb on - strand at 5369.193 kb on - strand at 5369.208 kb on - strand at 5369.224 kb on + strand at 5369.225 kb on - strand at 5369.403 kb on + strand, within PS417_24750 at 5369.407 kb on - strand, within PS417_24750 at 5369.407 kb on - strand, within PS417_24750 at 5369.443 kb on - strand, within PS417_24750 at 5369.483 kb on + strand, within PS417_24750 at 5369.484 kb on - strand, within PS417_24750 at 5369.484 kb on - strand, within PS417_24750 at 5369.487 kb on + strand, within PS417_24750 at 5369.487 kb on + strand, within PS417_24750 at 5369.487 kb on + strand, within PS417_24750 at 5369.487 kb on + strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.488 kb on - strand, within PS417_24750 at 5369.493 kb on + strand, within PS417_24750 at 5369.494 kb on - strand, within PS417_24750 at 5369.494 kb on - strand, within PS417_24750 at 5369.494 kb on - strand, within PS417_24750 at 5369.494 kb on - strand, within PS417_24750 at 5369.496 kb on + strand, within PS417_24750 at 5369.497 kb on - strand, within PS417_24750 at 5369.751 kb on + strand, within PS417_24750 at 5369.751 kb on + strand, within PS417_24750 at 5369.752 kb on - strand, within PS417_24750 at 5369.752 kb on - strand, within PS417_24750 at 5369.932 kb on - strand at 5369.935 kb on + strand at 5369.935 kb on + strand at 5369.936 kb on - strand at 5369.936 kb on - strand at 5369.936 kb on - strand at 5369.936 kb on - strand at 5369.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 5,367,114 - +1.1 5,367,114 - +0.4 5,367,114 - +0.6 5,367,114 - +1.5 5,368,133 - PS417_24745 0.26 -6.9 5,368,370 - PS417_24745 0.44 -2.6 5,368,370 - PS417_24745 0.44 -3.6 5,368,370 - PS417_24745 0.44 -2.0 5,368,501 - PS417_24745 0.55 -2.5 5,369,110 - +3.3 5,369,110 - +2.9 5,369,110 - +0.6 5,369,112 - +0.2 5,369,112 - -0.7 5,369,112 - -2.3 5,369,112 - +1.1 5,369,112 - +0.3 5,369,168 - +0.3 5,369,193 - -0.0 5,369,208 - +0.2 5,369,224 + -0.5 5,369,225 - +1.4 5,369,403 + PS417_24750 0.23 -0.7 5,369,407 - PS417_24750 0.23 +0.2 5,369,407 - PS417_24750 0.23 -0.3 5,369,443 - PS417_24750 0.29 +1.1 5,369,483 + PS417_24750 0.35 -0.7 5,369,484 - PS417_24750 0.35 -0.1 5,369,484 - PS417_24750 0.35 +1.1 5,369,487 + PS417_24750 0.35 -0.0 5,369,487 + PS417_24750 0.35 -0.7 5,369,487 + PS417_24750 0.35 +0.3 5,369,487 + PS417_24750 0.35 +0.7 5,369,488 - PS417_24750 0.35 +0.0 5,369,488 - PS417_24750 0.35 +1.0 5,369,488 - PS417_24750 0.35 +0.9 5,369,488 - PS417_24750 0.35 +0.4 5,369,488 - PS417_24750 0.35 -1.5 5,369,488 - PS417_24750 0.35 +0.0 5,369,488 - PS417_24750 0.35 -0.2 5,369,488 - PS417_24750 0.35 -0.2 5,369,493 + PS417_24750 0.36 -1.9 5,369,494 - PS417_24750 0.36 +0.4 5,369,494 - PS417_24750 0.36 -2.7 5,369,494 - PS417_24750 0.36 -0.3 5,369,494 - PS417_24750 0.36 +1.1 5,369,496 + PS417_24750 0.36 +0.1 5,369,497 - PS417_24750 0.37 +0.1 5,369,751 + PS417_24750 0.74 -0.1 5,369,751 + PS417_24750 0.74 +0.4 5,369,752 - PS417_24750 0.74 +1.4 5,369,752 - PS417_24750 0.74 -0.4 5,369,932 - +1.0 5,369,935 + -1.4 5,369,935 + +0.7 5,369,936 - +0.4 5,369,936 - +0.9 5,369,936 - -0.9 5,369,936 - -0.8 5,369,936 - -0.3
Or see this region's nucleotide sequence