Strain Fitness in Pseudomonas simiae WCS417 around PS417_20960

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
4,558,934	+		PS417_20955	0.61	+0.1
4,558,935	-		PS417_20955	0.61	-1.0
4,558,935	-				-1.3
4,559,043	+		PS417_20955	0.68	+0.3
4,559,044	-		PS417_20955	0.68	-0.6
4,559,064	+		PS417_20955	0.70	-0.5
4,559,064	+		PS417_20955	0.70	-0.4
4,559,064	+		PS417_20955	0.70	-0.1
4,559,064	+		PS417_20955	0.70	-0.2
4,559,065	-		PS417_20955	0.70	-0.3
4,559,065	-		PS417_20955	0.70	+0.2
4,559,065	-		PS417_20955	0.70	+0.5
4,559,065	-		PS417_20955	0.70	-0.7
4,559,199	+		PS417_20955	0.79	+0.5
4,559,200	-		PS417_20955	0.79	+0.3
4,559,200	-		PS417_20955	0.79	+0.1
4,559,205	+		PS417_20955	0.79	+1.3
4,559,206	-				-0.5
4,559,206	-		PS417_20955	0.79	-0.6
4,559,206	-		PS417_20955	0.79	+2.6
4,559,206	-		PS417_20955	0.79	-0.7
4,559,226	+		PS417_20955	0.81	+0.6
4,559,226	+		PS417_20955	0.81	+0.6
4,559,227	-		PS417_20955	0.81	+0.1
4,559,376	+				+0.5
4,559,401	-				+0.3
4,559,627	-				+0.5
4,559,637	+				-1.1
4,559,638	-				-0.4
4,559,746	+				-0.4
4,559,911	+		PS417_20960	0.13	-1.4
4,560,016	+		PS417_20960	0.21	-0.9
4,560,017	-				+1.3
4,560,229	+		PS417_20960	0.39	-3.0
4,560,229	+				+0.5
4,560,229	+		PS417_20960	0.39	+0.4
4,560,229	+		PS417_20960	0.39	-0.6
4,560,230	-		PS417_20960	0.39	-0.7
4,560,230	-		PS417_20960	0.39	-0.6
4,560,230	-		PS417_20960	0.39	-3.3
4,560,230	-		PS417_20960	0.39	-2.5
4,560,233	-		PS417_20960	0.39	+0.5
4,560,628	+		PS417_20960	0.71	-1.0
4,560,628	+		PS417_20960	0.71	-0.9
4,560,629	-		PS417_20960	0.71	-0.9
4,560,629	-		PS417_20960	0.71	-0.6
4,560,629	-		PS417_20960	0.71	-1.1
4,560,706	+		PS417_20960	0.78	-0.3
4,560,776	-		PS417_20960	0.83	-0.4
4,560,920	-				-0.7
4,561,176	+		PS417_20965	0.31	+0.4
4,561,176	+		PS417_20965	0.31	+0.4
4,561,177	-		PS417_20965	0.32	-0.5
4,561,177	-		PS417_20965	0.32	-0.5
4,561,177	-		PS417_20965	0.32	-0.4
4,561,177	-		PS417_20965	0.32	+0.1
4,561,177	-		PS417_20965	0.32	+0.1
4,561,289	+		PS417_20965	0.51	-1.0
4,561,289	+		PS417_20965	0.51	+0.2
4,561,290	-		PS417_20965	0.51	+0.6
4,561,290	-		PS417_20965	0.51	+0.3
4,561,290	-		PS417_20965	0.51	-2.4
4,561,478	+		PS417_20965	0.84	+0.7
4,561,479	-		PS417_20965	0.84	-0.1
4,561,700	-				-0.5
4,561,700	-				-0.8
4,561,700	-				-0.3
4,561,700	-				+0.0
4,561,889	+		PS417_20970	0.13	+0.7
4,561,890	-		PS417_20970	0.13	-2.5