Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18860 and PS417_18865 are separated by 82 nucleotides PS417_18865 and PS417_18870 are separated by 59 nucleotides PS417_18870 and PS417_18875 are separated by 16 nucleotides PS417_18875 and PS417_18880 are separated by 39 nucleotides
PS417_18860: PS417_18860 - transcriptional regulator, at 4,086,531 to 4,086,914
_18860
PS417_18865: PS417_18865 - hypothetical protein, at 4,086,997 to 4,087,647
_18865
PS417_18870: PS417_18870 - hypothetical protein, at 4,087,707 to 4,088,282
_18870
PS417_18875: PS417_18875 - hypothetical protein, at 4,088,299 to 4,088,589
_18875
PS417_18880: PS417_18880 - SAM-dependent methyltransferase, at 4,088,629 to 4,089,324
_18880
Position (kb) 4087
4088
4089 Strain fitness (log2 ratio) -2
-1
0
1 at 4086.839 kb on - strand, within PS417_18860 at 4086.913 kb on - strand at 4087.062 kb on + strand, within PS417_18865 at 4087.114 kb on + strand, within PS417_18865 at 4087.115 kb on - strand, within PS417_18865 at 4087.210 kb on + strand, within PS417_18865 at 4087.210 kb on + strand, within PS417_18865 at 4087.446 kb on + strand, within PS417_18865 at 4087.645 kb on + strand at 4087.646 kb on - strand at 4087.646 kb on - strand at 4087.799 kb on + strand, within PS417_18870 at 4087.818 kb on + strand, within PS417_18870 at 4087.818 kb on + strand, within PS417_18870 at 4087.818 kb on + strand, within PS417_18870 at 4087.818 kb on + strand, within PS417_18870 at 4087.819 kb on - strand, within PS417_18870 at 4087.819 kb on - strand, within PS417_18870 at 4087.819 kb on - strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.916 kb on + strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand at 4087.917 kb on - strand, within PS417_18870 at 4087.917 kb on - strand, within PS417_18870 at 4087.982 kb on - strand, within PS417_18870 at 4087.982 kb on - strand, within PS417_18870 at 4087.982 kb on - strand, within PS417_18870 at 4088.291 kb on - strand at 4088.300 kb on + strand at 4088.602 kb on - strand at 4088.825 kb on + strand, within PS417_18880 at 4088.825 kb on + strand, within PS417_18880 at 4088.826 kb on - strand, within PS417_18880 at 4088.826 kb on - strand, within PS417_18880 at 4088.826 kb on - strand, within PS417_18880 at 4088.867 kb on + strand, within PS417_18880 at 4088.907 kb on + strand, within PS417_18880 at 4088.907 kb on + strand at 4088.907 kb on + strand, within PS417_18880 at 4088.907 kb on + strand, within PS417_18880 at 4088.908 kb on - strand, within PS417_18880 at 4088.908 kb on - strand, within PS417_18880 at 4089.141 kb on + strand, within PS417_18880
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 4,086,839 - PS417_18860 0.80 +0.6 4,086,913 - +0.1 4,087,062 + PS417_18865 0.10 -0.0 4,087,114 + PS417_18865 0.18 +0.9 4,087,115 - PS417_18865 0.18 -0.5 4,087,210 + PS417_18865 0.33 -0.2 4,087,210 + PS417_18865 0.33 -0.8 4,087,446 + PS417_18865 0.69 +0.6 4,087,645 + -2.6 4,087,646 - -0.1 4,087,646 - -0.1 4,087,799 + PS417_18870 0.16 -0.7 4,087,818 + PS417_18870 0.19 +0.1 4,087,818 + PS417_18870 0.19 +0.0 4,087,818 + PS417_18870 0.19 -0.4 4,087,818 + PS417_18870 0.19 +0.5 4,087,819 - PS417_18870 0.19 -2.5 4,087,819 - PS417_18870 0.19 -0.5 4,087,819 - PS417_18870 0.19 -0.3 4,087,916 + PS417_18870 0.36 +1.1 4,087,916 + PS417_18870 0.36 +0.8 4,087,916 + PS417_18870 0.36 +0.1 4,087,916 + PS417_18870 0.36 -0.2 4,087,916 + PS417_18870 0.36 -1.0 4,087,917 - PS417_18870 0.36 -0.7 4,087,917 - PS417_18870 0.36 -0.3 4,087,917 - PS417_18870 0.36 -1.6 4,087,917 - PS417_18870 0.36 -0.3 4,087,917 - PS417_18870 0.36 -0.3 4,087,917 - PS417_18870 0.36 -0.9 4,087,917 - +0.3 4,087,917 - PS417_18870 0.36 -0.7 4,087,917 - PS417_18870 0.36 -0.1 4,087,982 - PS417_18870 0.48 -0.0 4,087,982 - PS417_18870 0.48 -0.3 4,087,982 - PS417_18870 0.48 -2.0 4,088,291 - +0.9 4,088,300 + -1.8 4,088,602 - +0.4 4,088,825 + PS417_18880 0.28 -0.4 4,088,825 + PS417_18880 0.28 +0.0 4,088,826 - PS417_18880 0.28 +0.0 4,088,826 - PS417_18880 0.28 -0.5 4,088,826 - PS417_18880 0.28 +0.3 4,088,867 + PS417_18880 0.34 -0.4 4,088,907 + PS417_18880 0.40 +0.5 4,088,907 + +1.7 4,088,907 + PS417_18880 0.40 +1.0 4,088,907 + PS417_18880 0.40 -0.1 4,088,908 - PS417_18880 0.40 -0.3 4,088,908 - PS417_18880 0.40 +0.2 4,089,141 + PS417_18880 0.74 -1.0
Or see this region's nucleotide sequence