Strain Fitness in Pseudomonas simiae WCS417 around PS417_18350

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,998,523	+				-0.8
3,998,523	+				+0.1
3,998,524	-				-0.9
3,998,533	-				+0.4
3,998,552	+				-0.2
3,998,553	-				-0.0
3,998,553	-				-0.3
3,998,554	+				+0.0
3,998,554	+				+0.6
3,998,554	+				-0.3
3,998,555	-				+2.0
3,998,555	-				+0.3
3,998,555	-				-0.0
3,998,555	-				+0.7
3,998,579	+				-0.9
3,998,579	+				+0.3
3,998,651	+				-0.7
3,998,658	-				-1.1
3,998,785	+		PS417_18350	0.46	+0.2
3,998,785	+		PS417_18350	0.46	+0.8
3,998,786	-		PS417_18350	0.46	+1.4
3,999,023	-				+0.2
3,999,046	-				+0.0
3,999,056	-				+0.7
3,999,117	+				+0.2
3,999,118	-				+0.8
3,999,170	-				+0.8
3,999,175	-				+0.0
3,999,175	-				+0.8
3,999,221	+				-0.5
3,999,221	+				+1.1
3,999,221	+				-0.2
3,999,222	-				+1.2
3,999,222	-				+0.3
3,999,223	+				-1.6
3,999,223	+				+0.3
3,999,224	-				+0.9
3,999,224	-				+0.4
3,999,238	+				-1.7
3,999,238	+				-0.1
3,999,238	+				+0.2
3,999,238	+				-0.5
3,999,238	+				+0.4
3,999,239	-				+0.5
3,999,239	-				+0.3
3,999,249	+				+1.1
3,999,250	-				+0.5
3,999,271	-		PS417_18355	0.13	-0.4
3,999,271	-		PS417_18355	0.13	+0.7
3,999,338	+		PS417_18355	0.44	+0.3
3,999,338	+		PS417_18355	0.44	-1.6
3,999,338	+		PS417_18355	0.44	+0.6
3,999,339	-		PS417_18355	0.45	+2.1
3,999,339	-		PS417_18355	0.45	-0.3
3,999,339	-		PS417_18355	0.45	-0.3
3,999,454	+				-0.7
3,999,454	+				+0.4
3,999,470	+				-1.3
3,999,562	+		PS417_18360	0.10	+0.1
3,999,597	+		PS417_18360	0.21	+0.9
3,999,598	-		PS417_18360	0.21	-0.1
3,999,614	-		PS417_18360	0.26	-2.1
3,999,857	+				+0.3
3,999,857	+				+0.8
3,999,857	+				+1.2
3,999,857	+				+0.2
3,999,858	-				-0.5
3,999,916	+				+0.1
3,999,917	-				+0.2