Strain Fitness in Pseudomonas simiae WCS417 around PS417_15415

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
3,377,684	+				+0.1
3,377,685	-				+0.7
3,377,685	-				-0.7
3,377,685	-				-0.7
3,377,688	+				-0.4
3,377,688	+				-0.3
3,377,688	+				-1.4
3,377,689	-				+0.1
3,377,689	-				+0.4
3,377,689	-				-0.2
3,377,699	+				+0.1
3,377,699	+				+1.1
3,377,700	-				-1.2
3,377,807	+				+2.0
3,378,018	-		PS417_15410	0.39	-0.3
3,378,114	+		PS417_15410	0.56	-0.9
3,378,482	-				-0.3
3,378,545	+				+0.4
3,378,878	+		PS417_15415	0.20	+0.2
3,378,878	+		PS417_15415	0.20	-0.1
3,379,007	+		PS417_15415	0.31	-0.8
3,379,008	-		PS417_15415	0.31	-0.6
3,379,412	+		PS417_15415	0.66	+0.3
3,379,593	-		PS417_15415	0.82	+0.6
3,379,607	+		PS417_15415	0.83	+1.9
3,379,608	-		PS417_15415	0.83	+0.0
3,379,608	-		PS417_15415	0.83	-0.5
3,379,608	-		PS417_15415	0.83	+0.1
3,379,626	-		PS417_15415	0.85	+1.0
3,379,667	+		PS417_15415	0.88	+0.2
3,379,668	-		PS417_15415	0.88	+1.8
3,379,794	-				+0.7
3,379,859	-				+0.7
3,379,910	+				-0.4
3,379,910	+				+0.6
3,379,911	-				+0.9
3,379,911	-				+0.7
3,379,911	-				+0.8
3,379,978	-		PS417_15420	0.15	+0.3
3,380,030	+		PS417_15420	0.23	-0.4
3,380,030	+				-0.3
3,380,031	-		PS417_15420	0.23	+0.8
3,380,031	-		PS417_15420	0.23	+0.1
3,380,267	+		PS417_15420	0.62	-0.1
3,380,267	+		PS417_15420	0.62	+0.4
3,380,268	-		PS417_15420	0.62	+0.1
3,380,276	+		PS417_15420	0.64	-0.5
3,380,277	-		PS417_15420	0.64	-0.5
3,380,300	+		PS417_15420	0.68	-1.0
3,380,300	+		PS417_15420	0.68	+0.0
3,380,300	+		PS417_15420	0.68	+0.1
3,380,301	-		PS417_15420	0.68	+0.4
3,380,301	-		PS417_15420	0.68	+0.3
3,380,301	-		PS417_15420	0.68	+0.7
3,380,301	-		PS417_15420	0.68	-0.6
3,380,462	+				+0.9
3,380,462	+				+2.6
3,380,462	+				-0.5
3,380,463	-				-0.7
3,380,510	+				+0.0
3,380,530	+				-0.1
3,380,631	+				+0.2
3,380,631	+				+0.1
3,380,632	-				+0.6
3,380,744	-				-0.6