Strain Fitness in Pseudomonas simiae WCS417 around PS417_13470

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,963,325	-		PS417_13465	0.47	+0.2
2,963,536	+		PS417_13465	0.63	+0.6
2,963,537	-		PS417_13465	0.63	+0.8
2,963,846	+		PS417_13465	0.87	+0.3
2,963,850	-		PS417_13465	0.87	-0.6
2,963,850	-		PS417_13465	0.87	+1.3
2,963,966	+				+0.0
2,963,967	-				-0.4
2,964,017	+				+0.1
2,964,018	-				+0.0
2,964,094	+				+0.2
2,964,095	-				+0.1
2,964,205	+		PS417_13470	0.14	-0.4
2,964,205	+		PS417_13470	0.14	+0.5
2,964,286	+		PS417_13470	0.20	+0.2
2,964,286	+		PS417_13470	0.20	-1.0
2,964,286	+		PS417_13470	0.20	+0.7
2,964,286	+				-0.7
2,964,303	+		PS417_13470	0.21	-0.6
2,964,304	-		PS417_13470	0.21	+0.3
2,964,334	+		PS417_13470	0.23	-0.4
2,964,343	+		PS417_13470	0.24	-0.1
2,964,436	+		PS417_13470	0.31	+1.3
2,964,436	+				+1.6
2,964,437	-		PS417_13470	0.31	+2.0
2,964,437	-		PS417_13470	0.31	+0.4
2,964,437	-		PS417_13470	0.31	+0.4
2,964,437	-		PS417_13470	0.31	+0.3
2,964,439	+		PS417_13470	0.31	-0.2
2,964,440	-		PS417_13470	0.31	-0.2
2,964,739	+		PS417_13470	0.54	+1.5
2,964,739	+		PS417_13470	0.54	+0.0
2,964,740	-				-0.5
2,964,818	-		PS417_13470	0.60	-0.7
2,964,866	-				-0.3
2,965,222	+		PS417_13470	0.90	+0.1
2,965,223	-				+0.4
2,965,256	-				-0.8
2,965,262	-				-0.6
2,965,289	-				-2.0
2,965,354	+				-0.6
2,965,355	-				-0.2
2,965,362	+				-0.3
2,965,373	+				+0.8
2,965,374	-				+0.2
2,965,374	-				+0.3
2,965,386	+				-0.8
2,965,561	+				-0.4
2,965,561	+				-0.1
2,965,576	-				-0.0
2,965,651	+				-0.1
2,965,679	-				-0.3
2,965,679	-				+0.6
2,965,741	-		PS417_13475	0.12	-0.0
2,965,801	+		PS417_13475	0.14	-0.4
2,965,802	-				+2.3
2,965,816	+		PS417_13475	0.15	+0.6
2,965,827	+		PS417_13475	0.15	+0.6
2,965,891	+		PS417_13475	0.17	-0.5
2,965,891	+		PS417_13475	0.17	+0.1
2,966,005	+		PS417_13475	0.21	+1.6
2,966,005	+		PS417_13475	0.21	+0.2
2,966,006	-		PS417_13475	0.21	+2.3
2,966,006	-		PS417_13475	0.21	-0.6
2,966,192	-		PS417_13475	0.27	-0.1
2,966,216	-		PS417_13475	0.28	-0.0
2,966,350	+		PS417_13475	0.33	-0.1
2,966,350	+		PS417_13475	0.33	-0.5
2,966,351	-		PS417_13475	0.33	+0.4
2,966,351	-		PS417_13475	0.33	-0.0
2,966,351	-		PS417_13475	0.33	-1.6
2,966,351	-		PS417_13475	0.33	-0.5
2,966,351	-		PS417_13475	0.33	-0.5
2,966,352	+		PS417_13475	0.33	-2.5
2,966,352	+		PS417_13475	0.33	-0.6
2,966,353	-				+1.3
2,966,353	-		PS417_13475	0.33	-0.0