Strain Fitness in Pseudomonas simiae WCS417 around PS417_13450

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
2,958,342	+				+0.7
2,958,480	+		PS417_13445	0.85	-2.0
2,958,662	-				+0.3
2,958,666	+				+0.4
2,958,669	+				-0.1
2,958,678	+				-0.3
2,958,718	-				-0.2
2,958,747	-				+0.5
2,958,771	-				-0.4
2,958,778	-				-1.0
2,958,781	+				-0.3
2,958,782	-				+0.8
2,958,945	+				-1.6
2,958,946	-				-0.6
2,959,009	-				-0.9
2,959,014	+				+0.4
2,959,349	+		PS417_13450	0.23	+0.2
2,959,350	-		PS417_13450	0.23	+0.2
2,959,350	-		PS417_13450	0.23	+1.3
2,959,507	+		PS417_13450	0.34	-1.6
2,959,508	-		PS417_13450	0.34	+0.4
2,959,540	+		PS417_13450	0.37	-1.9
2,959,541	-				-0.0
2,959,645	+		PS417_13450	0.44	-1.0
2,959,646	-		PS417_13450	0.44	-0.5
2,959,682	-		PS417_13450	0.47	-0.8
2,959,682	-		PS417_13450	0.47	+0.1
2,959,698	+		PS417_13450	0.48	-0.7
2,959,735	+		PS417_13450	0.50	+0.1
2,959,736	-		PS417_13450	0.50	+1.3
2,959,736	-		PS417_13450	0.50	+0.3
2,959,783	+		PS417_13450	0.54	-0.5
2,959,795	+		PS417_13450	0.54	-0.8
2,959,796	-		PS417_13450	0.54	+0.9
2,960,123	-		PS417_13450	0.77	+0.2
2,960,123	-		PS417_13450	0.77	+0.5
2,960,335	+				-1.4
2,960,336	-				-0.4
2,960,584	-		PS417_13455	0.23	-2.4
2,960,584	-		PS417_13455	0.23	-1.3
2,960,813	+		PS417_13455	0.85	-1.9
2,960,814	-		PS417_13455	0.86	-2.4
2,960,915	-				+0.2
2,960,934	-				-0.6
2,961,027	-				+0.6
2,961,062	+				-0.3
2,961,106	-				-0.8
2,961,106	-				-0.3
2,961,264	+		PS417_13460	0.17	+0.1
2,961,265	-		PS417_13460	0.17	+0.1
2,961,402	+		PS417_13460	0.25	+0.7
2,961,402	+		PS417_13460	0.25	-1.6
2,961,403	-		PS417_13460	0.25	+0.1
2,961,430	+		PS417_13460	0.26	+0.8
2,961,430	+		PS417_13460	0.26	+0.1
2,961,431	-		PS417_13460	0.26	+0.1