Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01275 and PS417_01280 are separated by 132 nucleotides PS417_01280 and PS417_01285 are separated by 141 nucleotides PS417_01285 and PS417_01290 are separated by 87 nucleotides
PS417_01275: PS417_01275 - LysR family transcriptional regulator, at 277,883 to 278,770
_01275
PS417_01280: PS417_01280 - peptidoglycan-binding protein LysM, at 278,903 to 279,343
_01280
PS417_01285: PS417_01285 - haloacid dehalogenase, at 279,485 to 280,147
_01285
PS417_01290: PS417_01290 - ADP-ribose diphosphatase, at 280,235 to 280,801
_01290
Position (kb) 278
279
280 Strain fitness (log2 ratio) -2
-1
0
1
2 at 278.266 kb on - strand, within PS417_01275 at 278.318 kb on - strand at 278.335 kb on - strand, within PS417_01275 at 278.448 kb on - strand, within PS417_01275 at 278.448 kb on - strand, within PS417_01275 at 278.548 kb on - strand, within PS417_01275 at 278.808 kb on + strand at 278.902 kb on + strand at 278.902 kb on + strand at 278.903 kb on - strand at 278.908 kb on + strand at 279.159 kb on + strand, within PS417_01280 at 279.223 kb on + strand, within PS417_01280 at 279.258 kb on - strand, within PS417_01280 at 279.258 kb on - strand, within PS417_01280 at 279.342 kb on - strand at 279.420 kb on - strand at 279.511 kb on - strand at 279.949 kb on - strand, within PS417_01285 at 279.971 kb on - strand, within PS417_01285 at 280.162 kb on + strand at 280.162 kb on + strand at 280.162 kb on + strand at 280.163 kb on - strand at 280.166 kb on + strand at 280.166 kb on + strand at 280.167 kb on - strand at 280.167 kb on - strand at 280.203 kb on + strand at 280.205 kb on + strand at 280.206 kb on - strand at 280.206 kb on - strand at 280.269 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 278,266 - PS417_01275 0.43 -0.5 278,318 - -0.2 278,335 - PS417_01275 0.51 -0.7 278,448 - PS417_01275 0.64 +0.3 278,448 - PS417_01275 0.64 -0.1 278,548 - PS417_01275 0.75 +1.6 278,808 + -0.3 278,902 + -0.4 278,902 + -0.1 278,903 - -0.1 278,908 + -0.0 279,159 + PS417_01280 0.58 -0.3 279,223 + PS417_01280 0.73 -0.7 279,258 - PS417_01280 0.80 -2.0 279,258 - PS417_01280 0.80 -0.9 279,342 - -0.4 279,420 - +0.5 279,511 - +0.8 279,949 - PS417_01285 0.70 -0.9 279,971 - PS417_01285 0.73 +0.1 280,162 + -2.1 280,162 + -1.0 280,162 + +1.3 280,163 - -0.7 280,166 + +0.6 280,166 + +0.8 280,167 - +0.3 280,167 - -1.2 280,203 + +0.4 280,205 + -0.5 280,206 - +0.3 280,206 - +1.8 280,269 + -0.2
Or see this region's nucleotide sequence