Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00895 and PS417_00900 are separated by 180 nucleotides PS417_00900 and PS417_00905 are separated by 139 nucleotides
PS417_00895: PS417_00895 - succinate-semialdehyde dehydrogenase, at 199,231 to 200,673
_00895
PS417_00900: PS417_00900 - 4-aminobutyrate aminotransferase, at 200,854 to 202,131
_00900
PS417_00905: PS417_00905 - histidine kinase, at 202,271 to 203,479
_00905
Position (kb) 200
201
202
203 Strain fitness (log2 ratio) -2
-1
0
1 at 200.043 kb on + strand, within PS417_00895 at 200.074 kb on + strand, within PS417_00895 at 200.074 kb on + strand at 200.074 kb on + strand, within PS417_00895 at 200.117 kb on - strand, within PS417_00895 at 200.134 kb on + strand, within PS417_00895 at 200.135 kb on - strand, within PS417_00895 at 200.473 kb on + strand, within PS417_00895 at 200.473 kb on + strand, within PS417_00895 at 200.473 kb on + strand, within PS417_00895 at 200.474 kb on - strand, within PS417_00895 at 200.474 kb on - strand, within PS417_00895 at 200.479 kb on + strand, within PS417_00895 at 200.653 kb on + strand at 200.653 kb on + strand at 200.653 kb on + strand at 200.653 kb on + strand at 200.654 kb on - strand at 200.809 kb on + strand at 200.809 kb on + strand at 201.103 kb on + strand, within PS417_00900 at 201.112 kb on + strand, within PS417_00900 at 201.112 kb on + strand, within PS417_00900 at 201.710 kb on - strand, within PS417_00900 at 201.748 kb on + strand, within PS417_00900 at 201.749 kb on - strand, within PS417_00900 at 202.129 kb on + strand at 202.217 kb on + strand at 202.238 kb on + strand at 202.296 kb on + strand at 202.679 kb on + strand, within PS417_00905 at 202.679 kb on + strand, within PS417_00905 at 202.940 kb on - strand, within PS417_00905 at 203.117 kb on + strand, within PS417_00905
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 200,043 + PS417_00895 0.56 +0.1 200,074 + PS417_00895 0.58 -1.5 200,074 + -0.6 200,074 + PS417_00895 0.58 +0.8 200,117 - PS417_00895 0.61 +0.2 200,134 + PS417_00895 0.63 +0.6 200,135 - PS417_00895 0.63 -0.6 200,473 + PS417_00895 0.86 -0.9 200,473 + PS417_00895 0.86 -0.1 200,473 + PS417_00895 0.86 -0.1 200,474 - PS417_00895 0.86 -0.4 200,474 - PS417_00895 0.86 +0.3 200,479 + PS417_00895 0.86 -0.9 200,653 + +0.4 200,653 + -0.7 200,653 + -0.1 200,653 + +1.4 200,654 - +0.5 200,809 + -0.7 200,809 + +0.3 201,103 + PS417_00900 0.19 -0.7 201,112 + PS417_00900 0.20 -2.4 201,112 + PS417_00900 0.20 -0.4 201,710 - PS417_00900 0.67 -0.5 201,748 + PS417_00900 0.70 +0.5 201,749 - PS417_00900 0.70 -1.8 202,129 + -1.8 202,217 + -1.4 202,238 + +0.3 202,296 + +0.2 202,679 + PS417_00905 0.34 +0.8 202,679 + PS417_00905 0.34 -0.1 202,940 - PS417_00905 0.55 +0.0 203,117 + PS417_00905 0.70 -0.0
Or see this region's nucleotide sequence