Strain Fitness in Pseudomonas simiae WCS417 around PS417_00085

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_00080 and PS417_00085 are separated by 21 nucleotidesPS417_00085 and PS417_00090 overlap by 4 nucleotides PS417_00080: PS417_00080 - potassium transporter peripheral membrane component, at 17,327 to 18,700 _00080 PS417_00085: PS417_00085 - 16S rRNA methyltransferase, at 18,722 to 20,032 _00085 PS417_00090: PS417_00090 - methionyl-tRNA formyltransferase, at 20,029 to 20,982 _00090 Position (kb) 18 19 20 21Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 17.767 kb on + strand, within PS417_00080at 17.767 kb on + strand, within PS417_00080at 17.768 kb on - strand, within PS417_00080at 17.768 kb on - strand, within PS417_00080at 17.768 kb on - strand, within PS417_00080at 17.768 kb on - strand, within PS417_00080at 17.768 kb on - strand, within PS417_00080at 18.007 kb on + strand, within PS417_00080at 18.009 kb on + strand, within PS417_00080at 18.009 kb on + strand, within PS417_00080at 18.010 kb on - strand, within PS417_00080at 18.010 kb on - strand, within PS417_00080at 18.222 kb on + strand, within PS417_00080at 18.309 kb on + strand, within PS417_00080at 18.309 kb on + strand, within PS417_00080at 18.440 kb on - strand, within PS417_00080at 18.440 kb on - strand, within PS417_00080at 18.440 kb on - strand, within PS417_00080at 18.557 kb on + strand, within PS417_00080at 18.557 kb on + strand, within PS417_00080at 18.557 kb on + strand, within PS417_00080at 18.557 kb on + strand, within PS417_00080at 18.558 kb on - strand, within PS417_00080at 18.558 kb on - strand, within PS417_00080at 18.763 kb on - strandat 18.924 kb on + strand, within PS417_00085at 19.777 kb on - strand, within PS417_00085at 19.777 kb on - strand, within PS417_00085at 20.997 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
remove
17,767 + PS417_00080 0.32 +0.1
17,767 + PS417_00080 0.32 -0.5
17,768 - PS417_00080 0.32 -2.8
17,768 - PS417_00080 0.32 +1.4
17,768 - PS417_00080 0.32 +0.8
17,768 - PS417_00080 0.32 -1.0
17,768 - PS417_00080 0.32 -1.3
18,007 + PS417_00080 0.49 +1.9
18,009 + PS417_00080 0.50 -0.4
18,009 + PS417_00080 0.50 +0.8
18,010 - PS417_00080 0.50 -0.2
18,010 - PS417_00080 0.50 -0.3
18,222 + PS417_00080 0.65 -1.0
18,309 + PS417_00080 0.71 -1.3
18,309 + PS417_00080 0.71 -0.6
18,440 - PS417_00080 0.81 -1.2
18,440 - PS417_00080 0.81 +2.0
18,440 - PS417_00080 0.81 +0.1
18,557 + PS417_00080 0.90 -0.3
18,557 + PS417_00080 0.90 +0.5
18,557 + PS417_00080 0.90 +0.4
18,557 + PS417_00080 0.90 -0.2
18,558 - PS417_00080 0.90 +0.1
18,558 - PS417_00080 0.90 -0.3
18,763 - +0.1
18,924 + PS417_00085 0.15 -0.6
19,777 - PS417_00085 0.80 -0.5
19,777 - PS417_00085 0.80 -1.5
20,997 - -0.5

Or see this region's nucleotide sequence