Strain Fitness in Pseudomonas simiae WCS417 around PS417_04190

Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04180 and PS417_04185 are separated by 10 nucleotidesPS417_04185 and PS417_04190 are separated by 152 nucleotidesPS417_04190 and PS417_04195 are separated by 234 nucleotides PS417_04180: PS417_04180 - GntR family transcriptional regulator, at 937,349 to 938,098 _04180 PS417_04185: PS417_04185 - hypothetical protein, at 938,109 to 938,294 _04185 PS417_04190: PS417_04190 - phosphatidylcholine-hydrolyzing phospholipase, at 938,447 to 939,604 _04190 PS417_04195: PS417_04195 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data), at 939,839 to 940,750 _04195 Position (kb) 938 939 940Strain fitness (log2 ratio) -2 -1 0 1 2 3at 937.944 kb on - strand, within PS417_04180at 937.944 kb on - strand, within PS417_04180at 937.944 kb on - strand, within PS417_04180at 937.944 kb on - strand, within PS417_04180at 938.155 kb on + strand, within PS417_04185at 938.185 kb on - strand, within PS417_04185at 938.207 kb on - strand, within PS417_04185at 938.207 kb on - strand, within PS417_04185at 938.298 kb on + strandat 938.298 kb on + strandat 938.298 kb on + strandat 938.299 kb on - strandat 938.324 kb on + strandat 938.325 kb on - strandat 938.325 kb on - strandat 938.461 kb on + strandat 938.473 kb on - strandat 938.473 kb on - strandat 938.491 kb on - strandat 938.491 kb on - strandat 938.491 kb on - strandat 938.494 kb on + strandat 938.494 kb on + strandat 938.551 kb on + strandat 938.637 kb on + strand, within PS417_04190at 938.637 kb on + strand, within PS417_04190at 938.637 kb on + strand, within PS417_04190at 938.638 kb on - strand, within PS417_04190at 938.638 kb on - strand, within PS417_04190at 938.674 kb on + strand, within PS417_04190at 938.912 kb on + strand, within PS417_04190at 938.977 kb on - strand, within PS417_04190at 939.057 kb on + strand, within PS417_04190at 939.187 kb on + strand, within PS417_04190at 939.187 kb on + strand, within PS417_04190at 939.187 kb on + strand, within PS417_04190at 939.187 kb on + strand, within PS417_04190at 939.188 kb on - strand, within PS417_04190at 939.322 kb on + strand, within PS417_04190at 939.323 kb on - strand, within PS417_04190at 939.323 kb on - strand, within PS417_04190at 939.348 kb on - strand, within PS417_04190at 939.348 kb on - strand, within PS417_04190at 939.400 kb on - strand, within PS417_04190at 939.400 kb on - strand, within PS417_04190at 939.400 kb on - strand, within PS417_04190at 939.433 kb on - strand, within PS417_04190at 939.433 kb on - strand, within PS417_04190at 939.607 kb on + strandat 939.607 kb on + strandat 939.608 kb on - strandat 939.608 kb on - strandat 939.608 kb on - strandat 939.618 kb on + strandat 939.618 kb on + strandat 939.618 kb on + strandat 939.618 kb on + strandat 939.618 kb on + strandat 939.618 kb on + strandat 939.618 kb on + strandat 939.619 kb on - strandat 939.619 kb on - strandat 939.619 kb on - strandat 939.619 kb on - strandat 939.619 kb on - strandat 939.672 kb on + strandat 939.673 kb on - strandat 939.673 kb on - strandat 939.837 kb on + strandat 939.838 kb on - strandat 939.936 kb on - strand, within PS417_04195at 940.179 kb on - strand, within PS417_04195at 940.179 kb on - strand, within PS417_04195at 940.374 kb on + strand, within PS417_04195at 940.404 kb on - strand, within PS417_04195at 940.404 kb on - strand, within PS417_04195at 940.470 kb on - strand, within PS417_04195at 940.517 kb on + strand, within PS417_04195

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
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937,944 - PS417_04180 0.79 +1.0
937,944 - PS417_04180 0.79 -0.2
937,944 - PS417_04180 0.79 -1.0
937,944 - PS417_04180 0.79 +0.9
938,155 + PS417_04185 0.25 +0.3
938,185 - PS417_04185 0.41 +0.3
938,207 - PS417_04185 0.53 +1.2
938,207 - PS417_04185 0.53 +1.4
938,298 + +0.3
938,298 + +0.8
938,298 + -1.4
938,299 - -1.7
938,324 + -0.4
938,325 - +1.1
938,325 - -0.0
938,461 + -0.2
938,473 - +1.2
938,473 - +1.5
938,491 - +0.2
938,491 - +1.0
938,491 - -1.4
938,494 + -0.1
938,494 + +1.2
938,551 + +0.7
938,637 + PS417_04190 0.16 +0.4
938,637 + PS417_04190 0.16 +1.5
938,637 + PS417_04190 0.16 -0.1
938,638 - PS417_04190 0.16 +1.6
938,638 - PS417_04190 0.16 -1.6
938,674 + PS417_04190 0.20 +0.7
938,912 + PS417_04190 0.40 +1.2
938,977 - PS417_04190 0.46 +0.5
939,057 + PS417_04190 0.53 +0.4
939,187 + PS417_04190 0.64 -0.3
939,187 + PS417_04190 0.64 +1.2
939,187 + PS417_04190 0.64 +0.6
939,187 + PS417_04190 0.64 -2.3
939,188 - PS417_04190 0.64 +0.1
939,322 + PS417_04190 0.76 -1.2
939,323 - PS417_04190 0.76 +0.2
939,323 - PS417_04190 0.76 +1.4
939,348 - PS417_04190 0.78 -0.4
939,348 - PS417_04190 0.78 -0.6
939,400 - PS417_04190 0.82 +0.4
939,400 - PS417_04190 0.82 -0.5
939,400 - PS417_04190 0.82 +0.4
939,433 - PS417_04190 0.85 -0.0
939,433 - PS417_04190 0.85 -0.2
939,607 + -0.0
939,607 + -0.1
939,608 - +0.8
939,608 - -0.8
939,608 - +0.3
939,618 + +1.1
939,618 + -0.1
939,618 + -1.0
939,618 + +0.1
939,618 + +1.0
939,618 + +0.3
939,618 + +0.4
939,619 - -0.0
939,619 - -0.7
939,619 - +0.2
939,619 - -1.6
939,619 - +0.3
939,672 + +2.8
939,673 - +0.3
939,673 - -0.5
939,837 + +0.5
939,838 - +0.3
939,936 - PS417_04195 0.11 +0.5
940,179 - PS417_04195 0.37 +1.0
940,179 - PS417_04195 0.37 -1.4
940,374 + PS417_04195 0.59 -1.2
940,404 - PS417_04195 0.62 +2.7
940,404 - PS417_04195 0.62 -2.4
940,470 - PS417_04195 0.69 +0.8
940,517 + PS417_04195 0.74 +0.5

Or see this region's nucleotide sequence