Experiment: Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03340 and PS417_03345 are separated by 242 nucleotides PS417_03345 and PS417_03350 are separated by 18 nucleotides
PS417_03340: PS417_03340 - gluconate transporter, at 765,701 to 767,071
_03340
PS417_03345: PS417_03345 - type I secretion protein TolC, at 767,314 to 768,534
_03345
PS417_03350: PS417_03350 - cytochrome C peroxidase, at 768,553 to 769,659
_03350
Position (kb) 767
768
769 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 766.357 kb on + strand, within PS417_03340 at 766.425 kb on - strand, within PS417_03340 at 766.939 kb on + strand at 767.027 kb on - strand at 767.063 kb on + strand at 767.064 kb on - strand at 767.135 kb on + strand at 767.136 kb on - strand at 767.143 kb on - strand at 767.143 kb on - strand at 767.162 kb on + strand at 767.162 kb on + strand at 767.162 kb on + strand at 767.162 kb on + strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.163 kb on - strand at 767.258 kb on - strand at 767.288 kb on + strand at 767.695 kb on + strand, within PS417_03345 at 767.695 kb on + strand, within PS417_03345 at 767.696 kb on - strand, within PS417_03345 at 767.696 kb on - strand, within PS417_03345 at 767.696 kb on - strand, within PS417_03345 at 767.696 kb on - strand, within PS417_03345 at 767.696 kb on - strand, within PS417_03345 at 768.088 kb on - strand, within PS417_03345 at 768.122 kb on - strand, within PS417_03345 at 768.326 kb on + strand, within PS417_03345 at 768.458 kb on - strand at 768.512 kb on - strand at 768.552 kb on + strand at 768.757 kb on - strand, within PS417_03350 at 768.979 kb on + strand, within PS417_03350 at 768.980 kb on - strand, within PS417_03350 at 769.493 kb on + strand, within PS417_03350 at 769.493 kb on + strand, within PS417_03350 at 769.494 kb on - strand, within PS417_03350
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X remove 766,357 + PS417_03340 0.48 +0.6 766,425 - PS417_03340 0.53 +0.8 766,939 + +0.5 767,027 - -0.1 767,063 + -0.6 767,064 - +1.1 767,135 + -0.1 767,136 - -0.2 767,143 - +3.0 767,143 - +1.4 767,162 + -0.1 767,162 + +3.1 767,162 + +0.4 767,162 + +1.2 767,163 - -0.4 767,163 - -0.4 767,163 - -1.1 767,163 - -0.2 767,163 - +0.4 767,163 - -0.9 767,163 - +0.1 767,163 - -0.9 767,258 - -1.2 767,288 + -0.8 767,695 + PS417_03345 0.31 -2.3 767,695 + PS417_03345 0.31 -0.5 767,696 - PS417_03345 0.31 -1.9 767,696 - PS417_03345 0.31 -0.4 767,696 - PS417_03345 0.31 -0.2 767,696 - PS417_03345 0.31 -0.4 767,696 - PS417_03345 0.31 -1.5 768,088 - PS417_03345 0.63 +0.0 768,122 - PS417_03345 0.66 -0.5 768,326 + PS417_03345 0.83 +0.0 768,458 - -0.1 768,512 - -0.3 768,552 + -0.3 768,757 - PS417_03350 0.18 +0.4 768,979 + PS417_03350 0.38 +2.4 768,980 - PS417_03350 0.39 -0.6 769,493 + PS417_03350 0.85 +0.3 769,493 + PS417_03350 0.85 +0.1 769,494 - PS417_03350 0.85 +1.6
Or see this region's nucleotide sequence